MmuINT0057671 @ mm9
Intron Retention
Gene
ENSMUSG00000015085 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:MGI Symbol;Acc:MGI:1096863]
Coordinates
chr2:25252916-25253671:+
Coord C1 exon
chr2:25252916-25253033
Coord A exon
chr2:25253034-25253520
Coord C2 exon
chr2:25253521-25253671
Length
487 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CAACTCCTTGTTCTCTCTAGGTG
3' ss Score
10.67
Exon sequences
Seq C1 exon
TATGGCATCGTTCTGGATGCTGGCTCTTCACACACATCCATGTTTGTCTACAAGTGGCCAGCGGACAAGGAAAATGACACAGGTATCGTGGGCCAGCACAGCTCTTGCGATGTTCGAG
Seq A exon
GTGAGCATGGCCTTCGGTTCCTGTTCAGTCTTAGCTTTGCAGGCCCAAATGGTCATTCCCCCTCTGCTTGTTGCTAGGTGGGGCCCATTCAAGGCAGGAGTTCAAAAGGAGAGGCTGGCTTCTCTGGAGTGACCTGGGAGGAGCTGTGGGTACTTTATGTTCTAAAACTGAAGCCCTAGGGAACAGGTGGAAGCCTTGGGGTTTAATGACCCAAAACAGGTCTCTACACTATAGATGAGGCAGGTGAGCCTCTGAGGACCTAAGGGTGTATCCCTGTAGGTTCTATGGATGCTAGGCTAGGCTGACAATGCCCAAGTCTTTCTACGGGCACCTGTGCTCACAGCTACTAGGCAGGCGGCAGCATCAGAGACTCTGGGTGGCACCTGGACCCTTTGTCTCCAATTTGGGAAGGTGTGTCTAAATAGCTTCAATAGTGTATGCTGGAAACTGTCCACCAAGCCTGGGACCAACTCCTTGTTCTCTCTAG
Seq C2 exon
GTGGTGGCATCTCCAGCTACGCAAATGACCCTTCTAGGGCAGGCCAGAGTCTGGTTGAATGTCTTGAACAGGCACTTCGGGATGTGCCCAAAGACAGATATGCCAGCACTCCACTCTACCTGGGAGCTACAGCAGGCATGCGCCTACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015085-Entpd2:NM_009849:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(38.2=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTTCTGGATGCTGGCTC
R:
GCATGCCTGCTGTAGCTCC
Band lengths:
254-741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: