GgaINT0124636 @ galGal3
Intron Retention
Gene
ENSGALG00000008932 | F1NV62_CHICK
Description
NA
Coordinates
chr17:1313493-1314556:-
Coord C1 exon
chr17:1314439-1314556
Coord A exon
chr17:1313644-1314438
Coord C2 exon
chr17:1313493-1313643
Length
795 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CACAAGGTGCTCTCTTGCAGGAT
3' ss Score
7.42
Exon sequences
Seq C1 exon
TACGGCCTGGTGTTCGACGCCGGCTCCACGCACACGGCTCTCTATGTCTACCAGTGGCCTGCAGACAAGGAGAACGGCACGGGCATCGTCTCCCAGGTGGAGTCCTGCACTGTGAATG
Seq A exon
GTGAGAGCAGAGTGCTGGGACGTGTCTGTCCTTCTCCCCACCCTCTGCTCAGGCTAGGGACACCAGGGCTGGAGGCTGTTCTGGGCAGAGTCACTTAAATGGGACTGACAAAGGCCACTGACCTAGGGCAGAGTGCCTGGGCAAGGGGTGGGAGATTGTAGAGCCTGTCCTCATGACAAATCACGGCTCTGCAGCCACAGCGTGGCAGTTACTGGTTAACTGTGCTCCAAAGCAAAGGTCTGGTAAAGGGTGAAGGGTAAGCGAAGGTACACTTGGGCTAGTGGCAGGGCTGGAGTGCAGAGCTTGGGGGAAAGGTAAATAGTGATATTGGCTGTCCCCACCCAGTGCAGGACCACAGTGGGAGCTCAGATCTAGCACCAGCCTATAAAAATAAAAGCGTGTTTGTGCTGAGCTGCTTGGAGAGCGCCTCTGTGTGTGTATCAGCTCCACACATCCTCTCCAAAGGAGAAATGAAAGAATCTCCCTTTGCCAGGGAAGTAAGGAACCATGCTATTTGTCAACAGATTGCTGGGAAACTGGGATTAACCACACACTCAGCATCACAGCAGCTCCCCACTCCTTGGAGAGCAGGAGCTCACTGTCTGCTCCTGCAGCATGCATGTGCCACCTCCAGGCAAGCCAGCTCTGAGCAGTGCCCTTCTGGGGATGCCCTTGGAAGGGCATGATTGATCTTGGTACATGGGGAAAACCTGTGGGGTCTTCCTGGCTTTTAGGGTGGACATGTCTCCCATTATCCTGTTCCACTCCTGGGCATCACAAGGTGCTCTCTTGCAG
Seq C2 exon
GATCTGGCATCTCCAGCTACGCAGATGATCCCGCTGGAGCAGGTGCCATCCTGAAGCCCTGCCTGGACAAAGCCATGACAGTTATCCCTGTAGAGCAGCAGTGGCAGACACCCACCTACCTGGGGGCCACAGCGGGCATGCGGCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008932:ENSGALT00000014518:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(9.3=97.5)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGCCTGGTGTTCGACG
R:
CTGTGGCCCCCAGGTAGG
Band lengths:
250-1045
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]