BtaINT0056492 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048125 | ENTPD2
Description
Bos taurus ectonucleoside triphosphate diphosphohydrolase 2 (ENTPD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001105648]
Coordinates
chr11:106185057-106185920:+
Coord C1 exon
chr11:106185057-106185174
Coord A exon
chr11:106185175-106185769
Coord C2 exon
chr11:106185770-106185920
Length
595 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCTCCTGCTGCTCCCTCCAGGTG
3' ss Score
11.66
Exon sequences
Seq C1 exon
TATGGCATCGTCCTGGATGCGGGCTCTTCCCACACGTCCATGTTCATCTACAAGTGGCCGGCGGACAAAGAGAATGACACAGGCATCGTGGGCCAGCACAGCTCCTGCGACGCGCAAG
Seq A exon
GTAAGAGCCCTCTGAGCGCTGGGCGCCCCCAACCTGCATGCCCGCTCACTGTGGGGCCTCGGGAGCCCTCCCTGGTCTCAGCTGCTGCAGACTCGAGCCAGCAGACCTCTCTGCTTGGTGCCAGGGGGCCACTCCAGGCAGGAACTGCAGGAGCCCCCCACCTCCCAGAGGGAGGCTGCATCCCTAGGCCTTGGAAGGGCTGTGGACAGTTCCTAGAAAAGAAGCCCCAGGGAACATCTGGAAGGTTTGGGCCTTGCCTGGCCCAAGATTGGCTCTACGTCCCAGTAGAGCAGGAGGGGTCCCAAGGAGCTGGTGGGCACACCCAGGCAGGCCCGTGGGGAGGCCGGGCTGGGTGGACAACACCCAGTGCTTTGTCCAAGCACCTGTGTGCATGCCCACTGGGCAGGTGGCAGCTCGCAGACCGTGGGTGGCCCACAGGCGGCCCTTTCATCTCTGAGCGGGCGTCTCTGAGCATTTAAGCTGGGAAATTTGGTCTCAGCTGCCACCTGGCTTGGGAGCACAAACGCCCCCAGTCCTGCTGGCCTGTGGACCACCTAGAGGCTGCCCACCAGGCCCCTCCTGCTGCTCCCTCCAG
Seq C2 exon
GTGGAGGCATCTCTAGCTATGCTGACAACCCTTCTGGAGCCGGGCAGAGCCTTGTGGAATGCCTGAACCAGGCGCTTCGGGACGTGCCCAAGGAGAGACACGCGGGCACGCCACTCTACCTGGGAGCCACGGCAGGCATGCGCCTGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048125:ENSBTAT00000063714:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.2=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTCCTGGATGCGGG
R:
GCCGTGGCTCCCAGGTAG
Band lengths:
246-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development