GgaINT0127246 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1711444-1714137:-
Coord C1 exon
chr18:1714075-1714137
Coord A exon
chr18:1711638-1714074
Coord C2 exon
chr18:1711444-1711637
Length
2437 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
TTTTCTCTTTTCCTTCCCAGTGG
3' ss Score
10.63
Exon sequences
Seq C1 exon
AGATTCAGAATATTCAGAGAGCCTGTTTCTATGACAATATTACTGGTCTTCATGATCCACCAG
Seq A exon
GTGAATGGATGTAAAACCATAGGCCTACTAAAGGCAGGGCTGTTGTATCTACAGGAAAATCAATCTTGCTTGTAGGCTTGCATGAACTTCTTCATTTCATGCTGTATTTAGGTATACCTCCACCAGGACAATGTTCTGAGTGCATACCCATTCAGTTGCTGCTGCATACATATAGCATCTATATTTTATGCATTGCAGATGAGAAGGTTTGTTGCTTCCTGGTTCTATGTTGAGATGTAGCTCCAAGTATTTGAGACAATGCATAAGCTATATGACACTATCAAGCTTCTTTCTGCAGTCCAACATTGACAAAACTCTGACAAGCTGTAGAATGTAGACGTGTCTTTGTGGAGGGGAGGTGAAGGATCTCATAAAATAGAGTGCTGCAGCTGGAGTAGTGGTAGTAAATGAAAAGTTTCTTCTACATTTGATGAAATTGTTCTTTTATTTTAATAACTTTTAAAAATGTTTCACTCTGTGGAAGTTGCACACTTTTTTTTTTTTTTTTTTGCAAGGTATTGAAATCAAAGCATTTATCCAAAACTTCTTAAAAAAAAAAACAGGGTATTTAATCCAACCTCTTCCTCATCCTCCCCTTGTTTCTGTTCCCAAGTTTTGAAGCATGTTAAGCCTGCACATTCAAGCTTTCCCATTTTTACTCAGAGCCCACTGTTTTCTATGTACTACATGCTTTAGGAGGAGAGTGGTATTTCCTAAGATAATTACTAGACAGTGTGAGTTGAGAAACCTCAGTCTGTGGGTGATCCCAGTTGTGCTGTTTGATAACTGCTCTTAACCTAAACTGAAATGTAACTTTAGTACTTCTTCTGTAAAGGTGAGCAGCCTCAGTGTAGTTGGTCAGAGACAAAACAAGATGCACAGCTGGTCTTGAAACATTTGCAAAACTTAGGAACAGCCCAATGTCTTAGAGATGCCAAAGGCTGAATGGTGTCCAGTCATCAGTGGTGTCTGTTGGGTGCTCACTTCTGATATTTATAAGCTGATGTGTTCATCTTCTGTAAGGCTGGTTCCCAGTAATTTCTCTCCCACTTCTGGTGTAGAACTCCATTCTGCTTCAGACTAAATGCTTGGGATGTGATCTTATGAACAATTTGCCACCTCCTTGCTCTTAATTTTAATAAGCTCCTTAGGTTCTCGCATTTCCAACTGCCTGTGGAAGGTGTGGGCTCCATGCTACATGAGACTTGCAGTGGTTATTCAAACTTGTTGCCCTGTATGTTTCAGCCCTTAATTTTCCTGCTTTGTACAGACCTTTGAAAACCAGATGGGTTCAAGTATGAAATAAAACACTGTAAATACTGATCAATATTACAAAACTAATCCTGGTAGCAATTCCCTTTGCTTTGGTTTGAATGAACGTGAAGATAACCCAACAAAAATGTAAAGCCTAGATATAGCTGCTTCTTTCTGGCTGGCCAGCTTGTATTTTCTGGAGAACCAACACATTGTGTGTTCCTGCTCAGTACTAAGGACCCCAGCTATTATCAAAGTGCTGAGCCACCCCTTTTGTACTTCCAAAGCAAACTGTTGAACTGATTGCTGACATGACCATGGAATCCCATTTTTGTTCATATTTTGGCCACAAGGTCTTACTGCTGGCAGTCAGATTTGCCATCTGTAAAAAGGAACAAACAAGCAAAACGCCCAAACAAAAGAAACCAAAAGCAGGGAGGTCCTCACCCAGAATGTTTCAGAATCAAAGAAAAAAGAGTCATCTCTACTCTGATGCTTCATGGCAGCTTTGAGGTGCTCCGGTGTGCAGTTTTCCTGTGTTTAAAGTGCTCTTTTGACAAGGGAAGTCTTTTCAGGTGTATATAAAAATTGAAAGAATTATTCAAAATTGTTCACTAGGAAAATCTGGTAGCAAAATCTAGCAAAGTCTGGCAAATGTTTTTTTTCCCCCTCTTGTCACTGAAATAATACTGTTTACATCTCATCTGGAAGTCATTCCTTTTTCTTCTTTGAGTATTCAATAATGCTCCTATTTAACAAGTATAGTTATCTAACTCTTCATTTTAAACAGATATGCCCAGATAACTCAATTCCAACACTCAACCCAGAAATACTTTCTGCTGTAAGAATTCTAATAATTTCCAGTTCCTAGGCAACAGTCTCTCTCTTCTAAATGTTCAGGATATGTCTTTACTGGTCATGTAGAACTGCAAGTAAAGAGCTGGATGTTTTAGTAGGTTCCTACTAAAGCTACACTACTCTGCTGTATAAGCTTGTGGCTTCTGGTTCCACTGCTTCTGCACAGCGTCCCTGGTACATGCTGACTGCCTTGCCTACTGGTGGCATCTCCTGTCATTTGTCCCACAAAGCTTTTGCTGCTGCACTATTGCTCTCCTCTCTCCGCATCTCTTTATACCTGACAAATATTAAGGTTCACTTCATTATTTTCTCTTTTCCTTCCCAG
Seq C2 exon
TGGATCGTATCGTGGGTCTGGATCAGGTCACTGGAATAACAGAGACTGCTTTTGGCTCTGCATACAAGACCAAGAAGGGCATGTTTCGTACTGTTGGGCAGCTGTACAAAGAATCTCTCACCAAGCTGATGGCAACGCTCCGAAACACCAATCCCAATTTTGTTCGCTGCATCATTCCAAATCACGAGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]