GgaINT0127370 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1073902-1074767:+
Coord C1 exon
chr18:1073902-1074067
Coord A exon
chr18:1074068-1074664
Coord C2 exon
chr18:1074665-1074767
Length
597 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGA
5' ss Score
5
3' ss Seq
GCTGCCTGTTTTGCCTGCAGGTA
3' ss Score
11.22
Exon sequences
Seq C1 exon
GTGTGCTTGAGAAGCCTCTAGAGAAAAAGGCTGGCAGAAATTATGGCCCTCCAGGCACCAAGAAGCTCATCTACTTCATCGATGACATGAACATGCCAGCAGTGGATGCATATGGGACGGTGCAGCCCCATACGCTCATCAGGCAGCACCTGGACTATGGGCATTG
Seq A exon
GTAGGAGGCTGACTGGGCTGCACTGCTCAGACCTTTTTGTTCAGGCCCAGATTTTGGGATGGCTTTTTGGAGGATGCTGCAGTGCAGTTCTCTCTTCCGGGCCCGTGTTTGCCATTGCATCTTTCTGGGCTGGAGGATTCTGGGGCACGCTCAGGGGTTTGCCCTTCCCCAGCACACCAGCTTGCTCGCTCCCAGCCTGGCTGAGACGTGCTTGGCTCTGCTCTTGGCGTGGTGTGTGGCTGTGGTCTTGAGGCAGAATGCTCAGCATTGATGCCCTGCAGTGCTGAGAGCAGCGGGAGGTGGTGGATCCACCCCCTGTGGGAGTGCAGCATCCCTGCTGAGCCCCCGCTGCAAGCACCTGATGTTTGCACTCAGACAGCAGAAAACAAACATTTTCTAGGCAGAGGTAATTTGAAGAAAAAGCAGTGACAGTGCTTGGGAAGGAGATGAGTGCAGTTATATGTTGTAGCTGGCAGTGCTGCGAGAGATAAGGATGTTCTCAGCTCTGCATATAGGGAACATCGGGCATGGGCCTCCAGTGCAGCCCTGAAGCCAACCCAGACGTCATGCTCACCCTGCTGCCTGTTTTGCCTGCAG
Seq C2 exon
GTATGACAGGACCAAGCTGTCACTGAAGGAGATCACAAACGTGCAGTATGTGTCGTGCATGAACCCAACAGCGGGGAGCTTCACCATCAACCCACGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.2=100)
A:
NA
C2:
PF127752=AAA_7=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAGCCTCTAGAGAAAAAGGC
R:
CTGCAGGCGTGGGTTGATG
Band lengths:
262-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]