HsaINT0050075 @ hg38
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11781009-11783748:+
Coord C1 exon
chr17:11781009-11781174
Coord A exon
chr17:11781175-11783645
Coord C2 exon
chr17:11783646-11783748
Length
2471 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
AGAGCTTCTGACTGTTCCAGGTA
3' ss Score
7.53
Exon sequences
Seq C1 exon
CTGTCCTGGAGAAGCCTCTGGAAAAGAAGGCTGGCAGAAACTATGGCCCTCCAGGGAACAAGAAACTCATCTATTTCATTGATGACATGAACATGCCTGAGGTGGATGCCTACGGGACGGTGCAGCCCCACACCATCATCCGGCAGCATCTGGACTATGGCCACTG
Seq A exon
GTAAGAGCGCCCATGTAGAGGGACTGGCCCAAGGGAGCAGAGCCTAAGGCAGGGCTGAAGGCCAGTCTCTATTCTGCCTGAACGGCAAACCTCAGCATAGCTCTGGTGCCAGATGGGAATCTTTGTGGTAAACCACATTTCTCATTCAATTCTCTATTTCCCAGAGTGGTTCCTTCAAACAGGAGCACTAATATTCACATGAAACATTTAGCCAGAGAAGACACTGAGCTCTCATCTAAGGAAAAAAAACCTACTTTTTGCTTCAAGACTCATCTCCGAAGTTGCCTTTTTCACATGCCCGAAGCAGAATTAACCACTTCCCCTGCACCATGGCCCCACAGCACTGGGCATGTGCTTCAATGATAACACCTAACACACGCCAGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTAAGGCGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTGTACTGAAAATACAAAAATTAGCCAGGCGTGATGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATAGCTTGAACCTGGTAGGCGGAGATTGCAGTGAGCTGAGATCATACCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTTAAAAAAAAAAAACAAACAAAAAAAAAACTACCAAACACCCGGTACCATGCACCGTGTCTGCAGACCTTCCAGCCTCAGTGCCTTCAGAGCAGCTCAGAGGGCTGGATAGTATCTCTTGCGACAGCATAATTTTTAATGGCAAAAGTCTGAACTTACTAGGAAAAAAAAAAAAAGCAAGTCACTGATTTGAGACAACTTTGACTCACCTTTCTACCGCATACTGAATCTGCTGCTGAGAAAGAGTGAGAAGAGAGAATTCAGAGAGAAGAATGTTAGTTAAGATGGCAACTTGAGTTGCCTTCTCTTCCTTCCCAAAATCTTTATTGGATGCTTGAACTATGGAACTGTTTGCAATCTCCACACTGACATCTGAGCAGCTTAATTTCATGGACAATCATTAGAGTCAAGCTAACTAGTTTTACTTTAGATTCATGGTCACAAACCTTAAATGGGAAGTAGAAGCTTCCTGGAAATTCTACCATATGGCCTTAGTATGTCCACTCTCAGAAATGTCTATTTCATTCCATCTTCCCTCTCTTTGATCTTCCCACCACACCTCAGCTGATGACCTTGCCTTCTCAGAGAACACAGATGCCGCCTCCATTTCTTGCTTCCACATCTATACAACTCACCCGTGTCCCCATGCATCTCTCCTCCACCCTCCTGTTACATCTTACCTAAGGCCAAACCTTCCACCAGCCTCTTCATTCTACCGTCTCCCACTCATCGATCGGTCCCCATCTCCTCATTAGCTGCTTCACATCATTTAAACTTGCATAAACAGGCTGGGTGCAGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGAATCACTTGAGCCCAGGAGTTTGAGATCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATATAAAAATTAGCTGGATGTGGGGGCCCATGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCAGGAGAATGGCTTGAACCCAGAAGGTAGAGGTTGCAGTGAGCCGAGATCTGCCATTGCACTCCAGCCTGGGTGACCGAGCAAGACTCCGTCTCAAAAAAAGAATAAATTAAAAATAAACTTGCATAAATTTATTCTATTGGGTTAAAAAATTACTTTATAATTACTGTTCTGTCCCCACTCTCTTATCTCCCACTCACTCCTCAATCCACTATTATTTGATTTCTGTTCCCTCCACTGTTCTTACTAAACTACTATCTGCATCATTATTACAAAATCCAAGAAATCCTTTGCAAGCTTGTCCAGCTGCCTTATTTTGTTGTTGTTGTTGTTCTGGTTTGTTTTGTTTTAGGCTTTTAGCAGCCTGAAACCATGGTTTTTAGTTTCTGTCTCTAGTGATAAGTGGAAAAGAGGGATGAGGAAGGGGCATTACTGGCCCAACCAGAGATGGAAGCTAAGAACCCATGACTGCATTCTCTCCCTTAGACACCCCTGCTGAAGTCACTACCTTTGTTATTCTCTCTGCAGCCCTTGATGTGGTTGACCACTCTCTTCTTTTGAGAACACTGGCTTCCTTTGCCTTTTGGTATGGCACGAACCCCTGATTTTTCTCCTATCTTTTTGTCCATCCTGCTGGCTCGTCTTCCTATGCTATTTCCTTAGATATGGAGGTACCTTGGGAATCTGTCTTATGCTCTTATCTCTTCTCAATCCCTGCCGGTGGATCTAGACTTTTTTATCACCCAAACACATGAACAGTAGGGCACATCCTACCGCACCTTGACAAAGCACTCACCTGCCTCAGTCCTCAGACACCTTTCACCTAGAGCTTCTGACTGTTCCAG
Seq C2 exon
GTATGATCGGAGCAAGCTGTCCCTAAAGGAGATCACAAATGTACAGTATGTTTCCTGTATGAACCCCACGGCAGGCAGCTTCACCATCAACCCCCGGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174:ENST00000262442:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.2=100)
A:
NA
C2:
PF127752=AAA_7=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development