GgaINT0127412 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:608181-608508:-
Coord C1 exon
chr18:608405-608508
Coord A exon
chr18:608320-608404
Coord C2 exon
chr18:608181-608319
Length
85 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TATAATAAATCTATTACTAGAGT
3' ss Score
3.91
Exon sequences
Seq C1 exon
AAATGCTCCTTATCACCACCAACCCATATGACTACCCTTTTGTGAGTCAAGGTGAGATCACTGTCCCCAGCATTGATGACAAAGAGGAGCTTATGGCTACAGAT
Seq A exon
GTGAGTAGCATATAAAACAGGTCAACTGTTATAGGTCATGTATCATATTCAGACAAATATTTTGCTATAATAAATCTATTACTAG
Seq C2 exon
AGTGCCATTGACATCCTGGGCTTCACTGCTGATGAAAAGACTGCCATCTACAAGCTGACAGGGGCTGTCATGCACTACGGGAATTTGAAGTTCAAGCAGAAACAGCGAGAGGAGCAGGCAGAGCCAGATGGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.234
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATCACTGTCCCCAGCAT
R:
CTGCTCCTCTCGCTGTTTCTG
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]