GgaINT0127420 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:603228-603658:-
Coord C1 exon
chr18:603541-603658
Coord A exon
chr18:603352-603540
Coord C2 exon
chr18:603228-603351
Length
189 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
ATTACCATTTTGTCCCCCAGATA
3' ss Score
9.88
Exon sequences
Seq C1 exon
GTGCCATGGAGCATGAGCTGGTTCTGCACCAACTGAGGTGTAATGGTGTGCTGGAAGGGATCAGAATTTGCAGGAAAGGATTTCCCAACAGAGTCCTGTATGCAGATTTTAAACAGAG
Seq A exon
GTCAGACTGCATTCCATTCCTGGATTTTGGCCATCTTGAGTAGCTTATGAAATTTAAACTTCTCCTCTGGTGACAAAAACATTCTCTTAACATTTACATTTAGCAGTGGAGTTATGTTCTCTTTCTTGCAGCATACTAAGTAACTGATGGCAACAACAGACCTGTTTATATTACCATTTTGTCCCCCAG
Seq C2 exon
ATACAAAGTACTAAATGCAAGCGCTATTCCAGAGGGACAGTTCATTGACAGCAAGAAGGCTTGTGAGAAACTGCTTGGATCAATTGATATAGACCACACTCAGTATAAATTTGGTCACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCATGGAGCATGAGC
R:
TGTGACCAAATTTATACTGAGTGTGG
Band lengths:
237-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]