HsaINT0107729 @ hg19
Intron Retention
Gene
ENSG00000109063 | MYH3
Description
myosin, heavy chain 3, skeletal muscle, embryonic [Source:HGNC Symbol;Acc:7573]
Coordinates
chr17:10543880-10544519:-
Coord C1 exon
chr17:10544402-10544519
Coord A exon
chr17:10544004-10544401
Coord C2 exon
chr17:10543880-10544003
Length
398 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTTCCATGTCTACAATGCAGATA
3' ss Score
6.59
Exon sequences
Seq C1 exon
GGGCTATGGAACACAGCCTTGTTCTGCACCAGCTGCGGTGTAACGGTGTCCTGGAGGGCATCCGCATCTGCAGGAAAGGGTTCCCAAACAGGATTCTCTATGGCGATTTTAAACAAAG
Seq A exon
GTGTGTAATAAACATGTTCTATATGCTTGGGGATGAGATGTACGAACACTGGAATTTGAGAGGGAGAAAGATTCGTATGAAAAGACCTATTTCGAAAGAACAGATATGGACCTCCATGTAAACTGAACAATCTACCATTTGGCCAAGTTATATATATTTGTTTCTTCCATGTTTTTCTCTGGAATTTATCTGATATACAAAATGGCAGGAAAAGCTCTGACTGAAGAGTCAAGAGATCTAGATTCTAGACTGCTCTCTAGCAATGTGACTCCGAGCTAGTTCCCTCATCTCCTGGGACCTTGGCCTTCTGCCTATAGGAAGAGAGGCCTGAACTACATGTTCTCCAAGGTTTGTGTCTTTGCCAACAGTCTGTGATGATTTCCATGTCTACAATGCAG
Seq C2 exon
ATACCGAGTGCTGAATGCCAGTGCAATCCCTGAGGGACAATTCATTGACAGCAAGAAAGCCTGTGAAAAGCTTCTGGCATCCATTGATATTGACCACACTCAGTACAAATTTGGACATACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063-MYH3:NM_002470:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACAGCCTTGTTCTGCACC
R:
TGGTATGTCCAAATTTGTACTGAGTG
Band lengths:
231-629
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)