GgaINT0127437 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:594901-595469:-
Coord C1 exon
chr18:595266-595469
Coord A exon
chr18:595027-595265
Coord C2 exon
chr18:594901-595026
Length
239 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGAAATCTCTGTTTGTACAGAAC
3' ss Score
5.84
Exon sequences
Seq C1 exon
GATACCCAGATACATTTGGACGACGCTCTCAGGACACAGGAGGACCTGAAGGAGCAGGTGGCCATGGTGGAGCGCAGAGCAAACCTGTTGCAGGCTGAGATTGAGGAGCTACGGGCAGCCCTGGAGCAGACAGAGCGCTCGAGAAAAGTGGCTGAGCAGGAACTGATGGATGCAAGTGAGCGTGTGCAGCTCCTCCATACCCAG
Seq A exon
GTGAGGCCTTGATGCTCAAACTAGTTGTGTAGGCACTGTTATAGTGGCAGGGAGTAGTGGTGCCAACAGTGGAAAAATGGTCACAGTCCATCACCTTAGCCCACCACTGAAATTGTGTAGACAGCCATTTAACAAGGAATTTCAGATTTTGAATGTAAAGGTTGAAAAGAGTTGGTTTAGACTGCAGCTGGTGTATTTCAGGTCTCAGAGTACAAGTCTTGAAATCTCTGTTTGTACAG
Seq C2 exon
AACACCAGCTTGATCAACACCAAGAAGAAACTAGAAACGGACATTGCCCAAATTCAGAGTGAAATGGAGGATACCATCCAGGAAGCCCGCAATGCTGAAGAGAAGGCCAAGAAGGCCATCACCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=NA C2=0.833
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGGACGACGCTCTCAGG
R:
TGGCCTTCTCTTCAGCATTGC
Band lengths:
301-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]