RnoINT0096492 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53642551-53642952:+
Coord C1 exon
chr10:53642551-53642754
Coord A exon
chr10:53642755-53642826
Coord C2 exon
chr10:53642827-53642952
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CACTCCCTCCTCCTCCTCAGAAC
3' ss Score
8.69
Exon sequences
Seq C1 exon
GACACCCAGCTGCACCTGGATGACGCTCTCCGAGGCCAGGAGGACCTGAAGGAGCAGCTGGCGATCGTGGAGCGCAGAGCCAACCTGCTGCAGGCTGAGGTGGAGGAGCTGCGGGCCACTCTGGAGCAGACGGAGAGGGCCCGGAAGCTGGCAGAGCAGGAGCTGCTGGACTCCAACGAGAGGGTTCAGCTGCTGCACACCCAG
Seq A exon
GTGAGGGCAGGAGCATTGGGGTACGAGGGTCCACCTCAGACGCTGTGTATGACACTCCCTCCTCCTCCTCAG
Seq C2 exon
AACACCAGCCTCATCCACACCAAGAAGAAGTTGGAGACTGACCTCACACAGCTCCAGAGTGAGGTGGAGGATGCCAGCAGGGACGCAAGGAACGCCGAGGAGAAGGCCAAAAAGGCCATCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=0.857
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCCAACCTGCTGCAG
R:
AGCTGTGTGAGGTCAGTCTCC
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]