GgaINT0127440 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:594211-594552:-
Coord C1 exon
chr18:594448-594552
Coord A exon
chr18:594307-594447
Coord C2 exon
chr18:594211-594306
Length
141 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGCTTACCAACTGCTTTAGTCT
3' ss Score
2.98
Exon sequences
Seq C1 exon
GTGCGGGAGCTGGAAGGGGAGGTTGATGCTGAGCAGAAGCGCAGCGCTGAAGCCGTGAAGGGTGTGCGCAAGTACGAGAGGAGGGTGAAGGAGCTGACCTACCAG
Seq A exon
GTAAGGCTGATGGCATCTTTGCGTTGACACACCCATCTGACAGAAAGTCAAGGTATTTTTCTATGAAGTCCAAGAGGAAATGTCATTTTGTGGTATGGGGAAAATAATTTCTATGTCTTTCCTGCTTACCAACTGCTTTAG
Seq C2 exon
TCTGAGGAAGATCGCAAGAACATTCTTAGACTCCAGGATCTGGTGGACAAACTGCAGATGAAGGTGAAATCCTACAAGAGGCAAGCTGAGGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGAAGGGGAGGTTGAT
R:
GCCTCCTCAGCTTGCCTCTT
Band lengths:
194-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]