BtaINT0097462 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30231257-30231616:-
Coord C1 exon
chr19:30231512-30231616
Coord A exon
chr19:30231353-30231511
Coord C2 exon
chr19:30231257-30231352
Length
159 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
TCCCATGTTCTCTCTTGAAGAGT
3' ss Score
8.43
Exon sequences
Seq C1 exon
ATCCGAGAGCTGGAGTCCGAGCTTGAGGGGGAGCAGAAGAAGAACACTGAGTCTGTCAAGGGCCTGAGGAAATATGAGCGGCGGGTCAAGGAGTTAACTTACCAG
Seq A exon
GCAAGTGGAAGGAAACCCCAGGGGCATTTCCTCTGTAACGCGGAACCTCACCCTGGGTCCTCTCCAGAAAACAGGAAGAAACTCTTTAGCCCAGGCACTGGGACCCTGTGTGTCCCTGTCCCCTCCTGGAGACCTGCCATCCCATGTTCTCTCTTGAAG
Seq C2 exon
AGTGAAGAGGACAGGAAGAATGTGCTGAGATTACAGGATCTGGTGGACAAACTTCAAATGAAGGTCAAGTCCTACAAGAGGCAGGCGGAGGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803:ENSBTAT00000001120:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.771 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100),PF040127=PspA_IM30=PD(8.1=37.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCTGGAGTCCGAGCTT
R:
CTCCTCCGCCTGCCTCTT
Band lengths:
194-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development