GgaINT0127636 @ galGal3
Intron Retention
Gene
ENSGALG00000002389 | E1C9G7_CHICK
Description
NA
Coordinates
chr18:4717581-4718795:-
Coord C1 exon
chr18:4718595-4718795
Coord A exon
chr18:4717740-4718594
Coord C2 exon
chr18:4717581-4717739
Length
855 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
CCGTGTGCCCTCTTTCGCAGAAC
3' ss Score
10.34
Exon sequences
Seq C1 exon
GCTCCCGATGGAAATATGTGCCGCTGCTGGGAGAAGACTTGGATCTTCGCCGCATCACCTGGAGGCTCCCACCTGAAACCATTCCCCGCCTCTCTGGCAGCAGCCACCTCTCCTCGGACACCGAGGGTCTCCTCCGTGAGGAGGATGGCGACATGGCTACAGGCAGCCCCATGAGGAGCGGGACCCCCCGGCCCCAAGCAG
Seq A exon
GTGAAGGACGACTTCGTATGACACTGAGTGTCCTGTCTCGTCCTGCTCTGAGCCAAGGGGCTGCGGCTGGGTCAACCCCCTTCCTCCCCCTGTGTGCCCATCCTCCTGTTGGCATGATGTCCACGTGATGTAGAGTCTCAGTGTGTCTGTTCACGAGTGTCAAGGTAACCCCCATCTCGGCATGGACTTGGGAGCCTGCTAGCAAGTTGCTTCTACAAAAGGCTGAACCTTCGAGACACGAGCAAACTCAAATGATGCTTGGAAAGTACCGCCTCCAAAGGCAGCTCCTCAACTTAATTAAGTGTCCTGGGGTACATCAGCTGGACCGTTAAACAGGAATCTGGACTGGACAGCCTTTAAAGGGTTCCTTCCAGCTCAAACAATTCTATGATTCTATGGCAGCTGATCTCTCCTGGCCTGCTGAGATCTGCCAAGCACCGGAACAAGGAAGCAGTTTGCTTTTTAGATCCAACTGAGATGGGATCCAGAGAGAGATAAGGAGAAACCGCCTCCATAAAAGGCTGTTCTTCTTCTTCTGCCTTCTTTCTGAACCTGAAATTATAAACCTGCGCTTGCGTCAAAGGAGAGGTGTGAGGGAACGTGTTGAGAACTGCAAGCAGTGCCCCAGTGAGGCCGAGGTCTGGAGTTACCTTGGGCACCATGTGTGTCTGGTGCTGGTGTAGGGCAGCGTCTCTGTTTACCCGTTTGTTTCCCCCTCACTGTGTTGGGTGACTCATTGAAGACGGAGAGCTCCAGAACGACCTTCCAGAGCAACTGAAGCCAAGGCAAAGCCATGGGACCTGGAGCAGAAGCCCACCCTCAGCCAGGCCTCTTACCGTGTGCCCTCTTTCGCAG
Seq C2 exon
AACACCTGCTGAATGGCCGCATGGATTACTTCTCCGGCAGCAGCAGCACGCTGACCAGGACAGCAAACACCAGCTACCACCAGCACGTGCAGCAGGAGCACAGGGTGATGGGGAGCTCCTCACTGACCAGAGACTACTCCACCATGATGGCGGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389:ENSGALT00000003760:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=NA C2=0.648
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATGGAAATATGTGCCGCT
R:
CGCCATCATGGTGGAGTAGTC
Band lengths:
349-1204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]