BtaINT0078210 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018169 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr19:56475254-56475613:-
Coord C1 exon
chr19:56475600-56475613
Coord A exon
chr19:56475493-56475599
Coord C2 exon
chr19:56475254-56475492
Length
107 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TGACCCTGCTCTGTCCCCGCAGA
3' ss Score
-4.94
Exon sequences
Seq C1 exon
GGGGGCCCCGGAAG
Seq A exon
GTAGGTAGGTAGGTAACCCCCGGAATTCCCAGGGCTGCGGCAGCCCGCCCCTCGGGGCTCCGGGGTCTGCGGCCGGGCCTGTGGGAGTGACCCTGCTCTGTCCCCGC
Seq C2 exon
AGAGCACCTGGTGAACGGGCGGATGGACTTTGCCTTCCCGGGCAGCGCCAACTCCCTGCACAGGATGACCGTGAGCACCGCGGCCCACGGCGCCCACCTGAGCCCGCAGTTGTCCCACCGCGTGCTGAGCACCTCGTCCACCCTCACGCGGGACTACCACTCGCTGACCCGCACGGAGCACTCGCACTCCGCCACGCTGCCCAGGGACTACTCCACTCTCACCTCCCTTTCCTCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018169:ENSBTAT00000042566:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.790
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]