GgaINT0127635 @ galGal3
Intron Retention
Gene
ENSGALG00000002389 | E1C9G7_CHICK
Description
NA
Coordinates
chr18:4718595-4719894:-
Coord C1 exon
chr18:4719763-4719894
Coord A exon
chr18:4718796-4719762
Coord C2 exon
chr18:4718595-4718795
Length
967 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
GTGCTTACATTATCCCAAAGGCT
3' ss Score
5.49
Exon sequences
Seq C1 exon
TCCCCATCATTCCCGATGTCCCCATCATTGATGCTGAAGGAGGTGAGGACTACGACAGCTACCTGATGTACAGCACAGACGTGCTTCGCACTCCAGCTGGCAGCAAACGTCCCAGCGTCTCTGATGATTCAG
Seq A exon
GTACGTCGCTCCAGGTTTTGCAAAGGTCACTTCTAACATTCACTTTCCTTAACAGCTTTCAGCAGTGAGCTTCACTGCTCCTTTCCTCCTCACTGAGGAGGGGAGATCCGAGTCATGGAGCTAGTGGAGATCAACACTTCCAAAGCACCGGAGCTGGGAACACTTGACTAATATTAGCCTAAATAAGACCACGTTCTTGCCAAGAGGCAAAGGGAAATCTCACTGTGGGGTGGTGGTGTTCTTCATAGCTCTCTGTGTTCATCTTCCCTGTTTGTTACTGTCTGAATGGACCAAGGAAATTACTGTTAGCCAACCAGAGCTGGCAAAGCACAGATCTGAGTCCTCTGGAGGCTCAAGGTCTCAGCCAAGCCAACAGGAGGGAGCTCACCGAGAGATGGGGAGGCACTGGGCAGGGGATTGGGTCCCACTGGATCCCTATGGCCCCTCTATTCCTCCATCGCTTAGCTTTTAGGGTGAGGCTGGCTCCCTTGTCTACCGCACTGGGACAAGGGGGGAAAGACTGGTCATAAATCAGTGGGATTTGGAGGGTCTTTCCTGGGGGGTTCTCCAGAGCCTGGGATCCAGAAGCAACTCCCACGTCCTTGCAGAGAGCAGAAATAATGGGAACACCAAATGTCTGACCATCCTGCATGCACACTGCGGAGCAAGGAAGCCTCTCCTGAGCAGGGGACCGGTGTAGCAGACTGCTCGTGATAGGCGTGTGGTGGGACTTCGACTCTCACTTTTTGTCATGACGGACACGGGGCTGGAAAACAGCCCTGGGGTTGGGGCACACTGTGCGTGTCATGTTCCCTCCATCTGCCAGTGATGTGATAGTGCACCACTGAACTCATCAGCCAACGGGTGCTGTTCCCTTTCCCCTTCCTAGCAAGCGGCACGAAGGCGGTCGGTGTCTCGCTCTGTCCCCTCTAGACCATGCCAACACCGTGCTTACATTATCCCAAAG
Seq C2 exon
GCTCCCGATGGAAATATGTGCCGCTGCTGGGAGAAGACTTGGATCTTCGCCGCATCACCTGGAGGCTCCCACCTGAAACCATTCCCCGCCTCTCTGGCAGCAGCCACCTCTCCTCGGACACCGAGGGTCTCCTCCGTGAGGAGGATGGCGACATGGCTACAGGCAGCCCCATGAGGAGCGGGACCCCCCGGCCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389:ENSGALT00000003760:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=NA C2=0.588
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCATCATTCCCGATGTCC
R:
GGGTCCCGCTCCTCATGG
Band lengths:
318-1285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]