GgaINT0127635 @ galGal4
Intron Retention
Gene
ENSGALG00000002389 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr18:4698671-4700984:-
Coord C1 exon
chr18:4700853-4700984
Coord A exon
chr18:4698830-4700852
Coord C2 exon
chr18:4698671-4698829
Length
2023 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CCGTGTGCCCTCTTTCGCAGAAC
3' ss Score
10.34
Exon sequences
Seq C1 exon
TCCCCATCATTCCCGATGTCCCCATCATTGATGCTGAAGGAGGTGAGGACTACGACAGCTACCTGATGTACAGCACAGACGTGCTTCGCACTCCAGCTGGCAGCAAACGTCCCAGCGTCTCTGATGATTCAG
Seq A exon
GTACGTCGCTCCAGGTTTTGCAAAGGTCACTTCTAACATTCACTTTCCTTAACAGCTTTCAGCAGTGAGCTTCACTGCTCCTTTCCTCCTCACTGAGGAGGGGAGATCCGAGTCATGGAGCTAGTGGAGATCAACACTTCCAAAGCACCGGAGCTGGGAACACTTGACTAATATTAGCCTAAATAAGACCACGTTCTTGCCAAGAGGCAAAGGGAAATCTCACTGTGGGGTGGTGGTGTTCTTCATAGCTCTCTGTGTTCATCTTCCCTGTTTGTTACTGTCTGAATGGACCAAGGAAATTACTGTTAGCCAACCAGAGCTGGCAAAGCACAGATCTGAGTCCTCTGGAGGCTCAAGGTCTCAGCCAAGCCAACAGGAGGGAGCTCACCGAGAGATGGGGAGGCACTGGGCAGGGGATTGGGTCCCACTGGATCCCTATGGCCCCTCTATTCCTCCATCGCTTAGCTTTTAGGGTGAGGCTGGCTCCCTTGTCTACCGCACTGGGACAAGGGGGGAAAGACTGGTCATAAATCAGTGGGATTTGGAGGGTCTTTCCTGGGGGGTTCTCCAGAGCCTGGGATCCAGAAGCAACTCCCACGTCCTTGCAGAGAGCAGAAATAATGGGAACACCAAATGTCTGACCATCCTGCATGCACACTGCGGAGCAAGGAAGCCTCTCCTGAGCAGGGGACCGGTGTAGCAGACTGCTCGTGATAGGCGTGTGGTGGGACTTCGACTCTCACTTTTTGTCATGACGGACACGGGGCTGGAAAACAGCCCTGGGGTTGGGGCACACTGTGCGTGTCATGTTCCCTCCATCTGCCAGTGATGTGATAGTGCACCACTGAACTCATCAGCCAACGGGTGCTGTTCCCTTTCCCCTTCCTAGCAAGCGGCACGAAGGCGGTCGGTGTCTCGCTCTGTCCCCTCTAGACCATGCCAACACCGTGCTTACATTATCCCAAAGGCTCCCGATGGAAATATGTGCCGCTGCTGGGAGAAGACTTGGATCTTCGCCGCATCACCTGGAGGCTCCCACCTGAAACCATTCCCCGCCTCTCTGGCAGCAGCCACCTCTCCTCGGACACCGAGGGTCTCCTCCGTGAGGAGGATGGCGACATGGCTACAGGCAGCCCCATGAGGAGCGGGACCCCCCGGCCCCAAGCAGGTGAAGGACGACTTCGTATGACACTGAGTGTCCTGTCTCGTCCTGCTCTGAGCCAAGGGGCTGCGGCTGGGTCAACCCCCTTCCTCCCCCTGTGTGCCCATCCTCCTGTTGGCATGATGTCCACGTGATGTAGAGTCTCAGTGTGTCTGTTCACGAGTGTCAAGGTAACCCCCATCTCGGCATGGACTTGGGAGCCTGCTAGCAAGTTGCTTCTACAAAAGGCTGAACCTTCGAGACACGAGCAAACTCAAATGATGCTTGGAAAGTACCGCCTCCAAAGGCAGCTCCTCAACTTAATTAAGTGTCCTGGGGTACATCAGCTGGACCGTTAAACAGGAATCTGGACTGGACAGCCTTTAAAGGGTTCCTTCCAGCTCAAACAATTCTATGATTCTATGGCAGCTGATCTCTCCTGGCCTGCTGAGATCTGCCAAGCACCGGAACAAGGAAGCAGTTTGCTTTTTAGATCCAACTGAGATGGGATCCAGAGAGAGATAAGGAGAAACCGCCTCCATAAAAGGCTGTTCTTCTTCTTCTGCCTTCTTTCTGAACCTGAAATTATAAACCTGCGCTTGCGTCAAAGGAGAGGTGTGAGGGAACGTGTTGAGAACTGCAAGCAGTGCCCCAGTGAGGCCGAGGTCTGGAGTTACCTTGGGCACCATGTGTGTCTGGTGCTGGTGTAGGGCAGCGTCTCTGTTTACCCGTTTGTTTCCCCCTCACTGTGTTGGGTGACTCATTGAAGACGGAGAGCTCCAGAACGACCTTCCAGAGCAACTGAAGCCAAGGCAAAGCCATGGGACCTGGAGCAGAAGCCCACCCTCAGCCAGGCCTCTTACCGTGTGCCCTCTTTCGCAG
Seq C2 exon
AACACCTGCTGAATGGCCGCATGGATTACTTCTCCGGCAGCAGCAGCACGCTGACCAGGACAGCAAACACCAGCTACCACCAGCACGTGCAGCAGGAGCACAGGGTGATGGGGAGCTCCTCACTGACCAGAGACTACTCCACCATGATGGCGGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389:ENSGALT00000003760:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=NA C2=0.642
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]