GgaEX0003002 @ galGal4
Exon Skipping
Gene
ENSGALG00000002389 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr18:4698671-4700984:-
Coord C1 exon
chr18:4700853-4700984
Coord A exon
chr18:4699685-4699885
Coord C2 exon
chr18:4698671-4698829
Length
201 bp
Sequences
Splice sites
3' ss Seq
GTGCTTACATTATCCCAAAGGCT
3' ss Score
5.49
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
TCCCCATCATTCCCGATGTCCCCATCATTGATGCTGAAGGAGGTGAGGACTACGACAGCTACCTGATGTACAGCACAGACGTGCTTCGCACTCCAGCTGGCAGCAAACGTCCCAGCGTCTCTGATGATTCAG
Seq A exon
GCTCCCGATGGAAATATGTGCCGCTGCTGGGAGAAGACTTGGATCTTCGCCGCATCACCTGGAGGCTCCCACCTGAAACCATTCCCCGCCTCTCTGGCAGCAGCCACCTCTCCTCGGACACCGAGGGTCTCCTCCGTGAGGAGGATGGCGACATGGCTACAGGCAGCCCCATGAGGAGCGGGACCCCCCGGCCCCAAGCAG
Seq C2 exon
AACACCTGCTGAATGGCCGCATGGATTACTTCTCCGGCAGCAGCAGCACGCTGACCAGGACAGCAAACACCAGCTACCACCAGCACGTGCAGCAGGAGCACAGGGTGATGGGGAGCTCCTCACTGACCAGAGACTACTCCACCATGATGGCGGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.304 A=0.603 C2=0.642
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000003760fB320
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCATCATTCCCGATGTCC
R:
CGCCATCATGGTGGAGTAGTC
Band lengths:
284-485
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]