BtaEX0018549 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018169 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr19:56475194-56477879:-
Coord C1 exon
chr19:56477748-56477879
Coord A exon
chr19:56475910-56476098
Coord C2 exon
chr19:56475194-56475490
Length
189 bp
Sequences
Splice sites
3' ss Seq
GGCCCTTCGTTGTTCCTAAGGCT
3' ss Score
5.17
5' ss Seq
GAGGTGACC
5' ss Score
5.57
Exon sequences
Seq C1 exon
TCCCCATCATCCCTGACATCCCCATCGTGGACGCCCAGAGTGGGGAGGACTATGAGAGCTTCCTCATGTACAGCGATGATGTGCTCCGCTCTCCAGCCGGCAGCCAGAGGCCCAGCGTCTCTGATGACACCG
Seq A exon
GCTGCGGCTGGAAGTTCGAGCCCCTGCTGGGGGAGGAGCTGGACCTGAGGCGCGTCACGTGGCGGCTGCCCCCGGAGCTCATCCCGCGCCTGTCCGCCGGCAGCCGGCGCTCCTCCGACTCCGGGCCCCCGGGAGACGGCGCCGCCGATGGGGCCGATGGGGGCACGCGGGGCGCCAGCGGGGAGGGAG
Seq C2 exon
AGCACCTGGTGAACGGGCGGATGGACTTTGCCTTCCCGGGCAGCGCCAACTCCCTGCACAGGATGACCGTGAGCACCGCGGCCCACGGCGCCCACCTGAGCCCGCAGTTGTCCCACCGCGTGCTGAGCACCTCGTCCACCCTCACGCGGGACTACCACTCGCTGACCCGCACGGAGCACTCGCACTCCGCCACGCTGCCCAGGGACTACTCCACTCTCACCTCCCTTTCCTCCCAAAGTGAGTGCCGCCTCCTCCCCGGCCCTCCGGCCAATCGTTCCTCTCTTCCAGCTCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018169_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.581 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGTCTCTGATGACACCG
R:
TTGGGAGGAAAGGGAGGTGAG
Band lengths:
256-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development