GgaEX0003002 @ galGal3
Exon Skipping
Gene
ENSGALG00000002389 | E1C9G7_CHICK
Description
NA
Coordinates
chr18:4717581-4719894:-
Coord C1 exon
chr18:4719763-4719894
Coord A exon
chr18:4718595-4718795
Coord C2 exon
chr18:4717581-4717739
Length
201 bp
Sequences
Splice sites
3' ss Seq
GTGCTTACATTATCCCAAAGGCT
3' ss Score
5.49
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
TCCCCATCATTCCCGATGTCCCCATCATTGATGCTGAAGGAGGTGAGGACTACGACAGCTACCTGATGTACAGCACAGACGTGCTTCGCACTCCAGCTGGCAGCAAACGTCCCAGCGTCTCTGATGATTCAG
Seq A exon
GCTCCCGATGGAAATATGTGCCGCTGCTGGGAGAAGACTTGGATCTTCGCCGCATCACCTGGAGGCTCCCACCTGAAACCATTCCCCGCCTCTCTGGCAGCAGCCACCTCTCCTCGGACACCGAGGGTCTCCTCCGTGAGGAGGATGGCGACATGGCTACAGGCAGCCCCATGAGGAGCGGGACCCCCCGGCCCCAAGCAG
Seq C2 exon
AACACCTGCTGAATGGCCGCATGGATTACTTCTCCGGCAGCAGCAGCACGCTGACCAGGACAGCAAACACCAGCTACCACCAGCACGTGCAGCAGGAGCACAGGGTGATGGGGAGCTCCTCACTGACCAGAGACTACTCCACCATGATGGCGGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.289 A=0.588 C2=0.648
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCATCATTCCCGATGTCC
R:
CGCCATCATGGTGGAGTAGTC
Band lengths:
284-485
Functional annotations
There are 0 annotated functions for this event