RnoEX0045235 @ rn6
Exon Skipping
Gene
ENSRNOG00000005580 | Itgb4
Description
integrin subunit beta 4 [Source:RGD Symbol;Acc:2928]
Coordinates
chr10:104555150-104557464:+
Coord C1 exon
chr10:104555150-104555281
Coord A exon
chr10:104556583-104556777
Coord C2 exon
chr10:104557228-104557464
Length
195 bp
Sequences
Splice sites
3' ss Seq
GGCCCTTCGTTGTTCCCAAGGCG
3' ss Score
5.22
5' ss Seq
GAGGTGACT
5' ss Score
5.88
Exon sequences
Seq C1 exon
TTCCTATCATCCCAGACATCCCCATAGTGGACGCCCAGGGTGGAGAAGACTACGAAAACTTCCTCATGTACAGTGACGACGTTCTGCGCTCCCCAGCCAGCAGCCAGAGGCCCAGCGTTTCAGATGACACTG
Seq A exon
GCGGCGGCTGGAAGTTCGAGCCCCTGCTCGGGGAGGAGCTGGACCTGCGGCGCGTCACGTGGCGGCTACCCCCGGAACTCATCCCACGCCTGTCCGCCAGCAGCGGGCGCTCGGACGAAGACAGCAGCGTTACAGGGGGCGTGGAAGGGGAGGGCGGCGGCTGGATCCGCGGGGCTACGCCCCGGCCCCCGGGAG
Seq C2 exon
AGCACCTGGTGAATGGCCGGATGGACTTTGCCTATCCAGGCAGTGCCAACTCCCTGCATAGGATGACTGCTGCCAACGTGGCCTATGGCACACATCTAAGCCCACACCAGACCCACCGAATGCTGAGCACGTCTTCTACCCTTACCCGGGACTACCACTCTCTGACGCGCACAGACCACTCTCAGTCAGGCACACTTCCCCGGGACTACTCCACTCTCACTTCCCTTTCCTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005580_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.621 C2=0.713
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000065339fB7072
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGTGGAGAAGACTACGA
R:
CCGGGTAAGGGTAGAAGACGT
Band lengths:
247-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]