HsaINT0082893 @ hg38
Intron Retention
Gene
ENSG00000132470 | ITGB4
Description
integrin subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr17:75752446-75753974:+
Coord C1 exon
chr17:75752446-75752577
Coord A exon
chr17:75752578-75753764
Coord C2 exon
chr17:75753765-75753974
Length
1187 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GGCCCTTCGTTGTTCCCAAGGCT
3' ss Score
5.16
Exon sequences
Seq C1 exon
TCCCCATCATCCCTGACATCCCTATCGTGGACGCCCAGAGCGGGGAGGACTACGACAGCTTCCTTATGTACAGCGATGACGTTCTACGCTCTCCATCGGGCAGCCAGAGGCCCAGCGTCTCCGATGACACTG
Seq A exon
GTGAGTGGAGACCTGGGACCCACAAGAGGACAGTGGGGGTCTTGGGTACAGAGTGAGTCCACTGGGTCCAGAGAGGGCAAAGGGGCCAGCAACTAGAGGACATGGAGGTTAAGGCAGCCTTGGACAAATGCAATGGAGTGCACATCTGTGCATGGGGCACAGGAACCAGTGCCTGGGGGACAGACACACACAGCCTTGTGCAAGCGCACATGAGTTCATGCCCACGGGACCACGAAGAAACACAGCTTCACAAGTTGAAGGTTCACCAGCTGTGCCATGCACACAGGACACTCAGGCCACCCCCCAGGGGCAGGCCTGGCCCAGGAGCCCTGGGCAGCCACCAGGCGGCCACCTGGCAGGGGTAGGGGAGCCAAGGAGACAAGAACACCCCCAACAGCTCTGTCCTTCCTCCTTGATTCCCAGCACAAAGTGCTGCGGAGCCCTTAGCTGGGCCTCCTGAGTGCTCAGTGTCAGCTGTGGCTCCACCTGTGGGACATCAGATGAATCACTCATCCTTTCCATGCCTCACTTTTCTGCTCTGTATAATGGGATACCAATCACACAGTACCATGAGTGGAAAAACCTCTGGGGCACGTATATCTTTTGTATTTTCTTCTGTCCCTGCCGATGCCTCAAGCTGCCCCCGGTGAACACATACTGGCCCCCACGGGGCTCAGCTTGGGCTTAAGGAGCCATTTTGAGGGGTTCAGGTGGAGCGCAGCTGGTGTGACTCTGGAACCCCAGCTCAGCTGCTTCTAACACTACCTGCGAAGCGCTCGGTGGCTTGCGGAACGGTCCCTGGGAGGCGGGCAGGGGCAAGATTCCTCTCTCCATTGTACAAACGGGAAACTGAGTCTCGGAGAGGTTAAGTAAAGCAAGGGAGACCTCACAGCTGGTGACAGAGCCCAGACTTCCCCCAGGTTTCTGGCGGGTCCGGGGGTCTCTCCTCCCCAGCTGTGCCGAGGCTGCACTCGCTCATCTGGAAAGGCTTCAGCCGCGCAAGGGTTTCACCTGCCGCGGCCTTCCCGCTCCGGCCGTGCGCATCTACCCCCGCCCCCAACACACACCCCGGGATCCCGGGAGCTGGAGACGGGCTCCCCTCGCAGAGCCTACGGCCTTCCCCCGCCTGGCCCTGCTCGGCCCGGCGCCCCCCGGCGGTGCCAACGCGGCCCTTCGTTGTTCCCAAG
Seq C2 exon
GCTGCGGCTGGAAGTTCGAGCCCCTGCTGGGGGAGGAGCTGGACCTGCGGCGCGTCACGTGGCGGCTGCCCCCGGAGCTCATCCCGCGCCTGTCGGCCAGCAGCGGGCGCTCCTCCGACGCCGAGGCGCCCCACGGGCCCCCGGACGACGGCGGCGCGGGCGGGAAGGGCGGCAGCCTGCCCCGCAGTGCGACACCCGGGCCCCCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132470:ENST00000200181:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.676
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCATCATCCCTGACATCC
R:
GATGAGCTCCGGGGGCAG
Band lengths:
215-1402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development