GgaINT0127792 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:443109-443444:-
Coord C1 exon
chr18:443299-443444
Coord A exon
chr18:443211-443298
Coord C2 exon
chr18:443109-443210
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CCATGTATCTTGTGCAAAAGGAA
3' ss Score
2.66
Exon sequences
Seq C1 exon
CTGGAAGGGTCTCTGGAGCAAGAGAAGAAGCTGCGCATGGACCTCGAGAGAGCTAAGAGGAAACTTGAAGGAGACCTGAAGTTGGCTCATGATAGCATAATGGACTTGGAAAATGATAAACAGCAGCTGGATGAGAAACTGAAGAA
Seq A exon
GTAAGTGTGGTTGTGGGACATCTGAGTGCTGGACGGGTACACTTAGATGTTTTGTTCAGGCACTAACACCATGTATCTTGTGCAAAAG
Seq C2 exon
GAAAGACTTTGAAATCAGCCAGATCCAGAGCAAAATTGAGGATGAGCAAGCCCTGGGCATGCAGTTACAGAAGAAGATCAAGGAGCTGCAGGCAAGTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(24.2=65.3),PF0003816=Filament=FE(16.9=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0003816=Filament=FE(11.9=100),PF0157614=Myosin_tail_1=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGACCTGAAGTTGGCTCA
R:
GCCTGCAGCTCCTTGATCTTC
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]