MmuINT0103191 @ mm9
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67028008-67028329:+
Coord C1 exon
chr11:67028008-67028153
Coord A exon
chr11:67028154-67028238
Coord C2 exon
chr11:67028239-67028329
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
CACAAGGATTTTCCCTATAGGAA
3' ss Score
6.21
Exon sequences
Seq C1 exon
CTTGAAGGCTCTCTGGAACAAGAAAAGAAAATCCGGATGGATCTTGAAAGAGCCAAGAGGAAACTGGAGGGAGACCTGAAACTGGCCCAAGAGTCCACAATGGACGTAGAAAACGATAAACAGCAGCTTGATGAGAAACTCAAAAA
Seq A exon
GTAAGCGGTGAAGATAAAGGTCTCAGGGTGTGTGGAGGGATTATTATCAATGGCTCTGTAACTGACACAAGGATTTTCCCTATAG
Seq C2 exon
GAAAGAGTTTGAAATGAGCAATCTGCAGAGCAAGATTGAGGACGAGCAGGCCCTCGGCATGCAGCTGCAGAAGAAGATCAAGGAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.548
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(26.3=73.5),PF0003816=Filament=FE(16.9=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0003816=Filament=FE(10.6=100),PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAAGAGGAAACTGGAGG
R:
TTGATCTTCTTCTGCAGCTGC
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: