GgaINT0127798 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:441085-441770:-
Coord C1 exon
chr18:441574-441770
Coord A exon
chr18:441269-441573
Coord C2 exon
chr18:441085-441268
Length
305 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
ATGTGCTTTATTCTTCCCAGGAA
3' ss Score
8.97
Exon sequences
Seq C1 exon
GCCAAGAGTGCCCTGGCCCACGCCTTGCAGTCAGCCCGCCATGACTGTGACTTGCTCCGGGAACAATATGAGGAGGAGCAGGAAGCCAAGGGTGAGCTGCAGCGTGCCCTGTCCAAGGCCAACAGCGAAGTGGCCCAGTGGAGAACCAAATATGAGACGGATGCTATTCAGCGCACAGAGGAGCTGGAGGAGGCCAA
Seq A exon
GTATGTGGGGAAAGTGGGGAAGGCTGACAGAAAGTAATAACAGAAAATTGAAGAGATCACTGAAGTACTGTCAGGAAGAAGCCAATGCTGTGCTTTGGGATGGATGGCAAGAGAAGGGAAAATTAATCCCTTAATGTGTGTGGATTGGAAAATGAAAATATGCACAGAAGGCAGAAAATGGCAGACTGAGAACTAAGGAATGTATATTACAGACTATGAACTGGTTAGGTATGCTGTTAAGAAAAGCAACAGAGTAAGATGTACTCTTTGTTTGCTGACTGTGGTATGTGCTTTATTCTTCCCAG
Seq C2 exon
GAAGAAGCTAGCACAGCGTCTGCAGGATGCCGAGGAACATGTTGAAGCTGTGAATGCCAAATGCGCTTCCCTGGAAAAGACAAAGCAGAGGCTGCAGAATGAGGTGGAGGACCTGATGATTGACGTGGAGCGAGCAAATGCTGCCTGCGCAGCTCTGGACAAGAAGCAGAAGAACTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=NA C2=0.258
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(29.8=42.4),PF0003816=Filament=FE(22.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.1=100),PF0003816=Filament=FE(20.6=100),PF045827=Reo_sigmaC=PU(35.5=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACGCCTTGCAGTCAG
R:
CTGCTTCTTGTCCAGAGCTGC
Band lengths:
350-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]