MmuINT0103197 @ mm9
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67031255-67032863:+
Coord C1 exon
chr11:67031255-67031451
Coord A exon
chr11:67031452-67032679
Coord C2 exon
chr11:67032680-67032863
Length
1228 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TATCCATTTTCATTTCTCAGGAA
3' ss Score
9.85
Exon sequences
Seq C1 exon
GCCAAGAGTGCCTTAGCTCATGCTCTTCAGTCCTCCCGCCATGACTGTGACCTGCTGCGGGAACAGTATGAAGAAGAACAGGAAGCCAAGGCTGAGCTGCAGAGGGCCATGTCCAAAGCCAACAGTGAAGTGGCCCAGTGGAGGACAAAATATGAGACGGATGCCATCCAGCGCACAGAGGAGCTGGAGGAGGCCAA
Seq A exon
GTATGTGCCTGACTTGGTTAAAATGGCAGTATATCTACTAACAAAGTAGTTGGGTCAGGAATTCTCTGTGGGCAGAGGGTCCTTGCTTTCTCAAAGCTAAAGAATGCTGGAGAATAATGTGAACATCAATCCATTCAGGAAATACAAATATATGCTAAGTAGTCAGTGGAAATATATGACAGAAGTCCATGGTAGACAGAGAAAAGAAGAAGGCAAGAGGAAGCTGAATGGTAATTTTTCAAAGGGGAGAACTTTTGACCTCGTTCTGTCTACACAGATGCAGATAGAATTAGTAGAATAGCTTATTCAGTTAATTATATACTCTCACGTACTTCTCCCCCCCCCCCAACCACTAATGCAATAATTGGCCTAGGGGTATGAGTGCAAAGAGAAAAATAATCTGGATTGATAGTAGCTCTCTTTTTATATGCAAAAATATGACTGTAAGAGGAAATAAAAAGATGTGATCAAGGCCCAATGTGGTATACAGATGGAGACACTGCAGTAAGCAAGAAAGCACATGGTTTTATAAAGGAATAGATATACAATGCCATATGAAAGTTTCAGGATGGATCTTTGTGAGAAAGGATCTACATAGGAAAGAGTCTTACTCATCAGTTTAAGGTACCCTTAGGCATTCATTTTCAGAATAGTGCATAATCTATATACTGATAAAATCAGTGTTTCTGTCGATGCTTAAGAGTGATTTTGAAATAAACTCTAAGAGCTGCATTTGTTTTGGAAAAGATTGTTTTAATAGACAGATTAACAAAAACCTGGCAAAAAGGAGAAGAGATACAATTACTCAAAGACAAGGATGGCTCACTTAAATTTAACATGGTTAACATTTGAGTACTTAGTATGTGGGCCAGCCTAGAAGAACACAAAGATTAGCAAAATACAGACTCCACTCTCTGAGCATTAAAACTGAATGCAGACACAGATATAACTGGCAGCAATTTGACGCAGATTCTAAGTTCTACAAAGGAAGGCAGAGGGGTCAAGTTGGCTCAAGCTCCATAAAGTATAACTATGCTGAAATGTGGCTGCATTTGGCACTTGGTGGTAGGAGAGCAACAGTGAATTCCCAGAGAACCCGTTGTGTCAAACAAGCTTCAGAAACACTGGTTGGGGAAGTCTGGCTTTGGAAATACTCACTTAGAGCTGTTTTGAAACAGTCAGTTCTACTGATTACCATTCACATCTACTATCCATTTTCATTTCTCAG
Seq C2 exon
GAAGAAGCTGGCTCAGCGTCTGCAGGATGCTGAGGAGCACGTAGAAGCTGTGAACGCCAAGTGCGCTTCCCTGGAGAAGACGAAGCAGCGGCTGCAGAACGAGGTGGAGGACCTCATGATTGATGTGGAGAGGACCAACGCAGCCTGCGCCGCCCTGGACAAGAAGCAGAGAAACTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.274
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(34.4=50.0),PF0003816=Filament=FE(22.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.1=100),PF0003816=Filament=FE(21.1=100),PF045827=Reo_sigmaC=PU(36.4=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATGCTCTTCAGTCCTCC
R:
TCTCTGCTTCTTGTCCAGGGC
Band lengths:
354-1582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: