GgaINT0128181 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:372540-372780:-
Coord C1 exon
chr18:372753-372780
Coord A exon
chr18:372655-372752
Coord C2 exon
chr18:372540-372654
Length
98 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TTCTCTGTTTGGTTCGACAGCGG
3' ss Score
7.2
Exon sequences
Seq C1 exon
ACCGCGAGAATCAGTCGATCCTGATCAC
Seq A exon
GTAAGTATGGTCCCTGATCAGGTCCCTGCGGGGCTGCCCTGTGCCAGGGGACCTTCTCCCTGACCTCACGCTCTCTGCTTCTCTGTTTGGTTCGACAG
Seq C2 exon
CGGAGAATCCGGTGCAGGGAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCAACAATTGCAGCTAGTGGAGATAAGAAGAAGGAGGAGCAGCCAGCGGGCAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023884:ENSGALT00000040060:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.282
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCGAGAATCAGTCGATCC
R:
CTGCATTTTGCCCGCTGG
Band lengths:
143-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]