MmuINT0103680 @ mm9
Intron Retention
Gene
ENSMUSG00000055775 | Myh8
Description
myosin, heavy polypeptide 8, skeletal muscle, perinatal [Source:MGI Symbol;Acc:MGI:1339712]
Coordinates
chr11:67096754-67096988:+
Coord C1 exon
chr11:67096754-67096781
Coord A exon
chr11:67096782-67096879
Coord C2 exon
chr11:67096880-67096988
Length
98 bp
Sequences
Splice sites
5' ss Seq
CACGTATGT
5' ss Score
7.26
3' ss Seq
TTTCCCCTGTGTTTTAACAGCGG
3' ss Score
11.04
Exon sequences
Seq C1 exon
ATCGTGAGAACCAGTCCATCCTGATCAC
Seq A exon
GTATGTGACTTTCTTCTTCTTTCTGGTTGGCAGCAACTGTTTTAACCATTGCTGGTAGATTGCACAGTTCTGATCTCCTTTCCCCTGTGTTTTAACAG
Seq C2 exon
CGGAGAATCCGGGGCCGGGAAGACTGTGAACACGAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTCACTGGGGACAAGAAGAAGGAGGAGTCTGGCAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055775-Myh8:NM_177369:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.162
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGAGAACCAGTCCATCCT
R:
TGCATTTTGCCAGACTCCTCC
Band lengths:
135-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: