DreINT0180446 @ danRer10
Intron Retention
Gene
ENSDARG00000095217 | zgc:66156
Description
zgc:66156 [Source:ZFIN;Acc:ZDB-GENE-040426-1554]
Coordinates
chr22:247745-248560:-
Coord C1 exon
chr22:248533-248560
Coord A exon
chr22:247860-248532
Coord C2 exon
chr22:247745-247859
Length
673 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGT
5' ss Score
9.27
3' ss Seq
TTTTTGAAACATCCTCACAGTGG
3' ss Score
4.71
Exon sequences
Seq C1 exon
ACAGGGAGAATCAGTCTATCCTGATTAC
Seq A exon
GTAAGTTGGCATGTTTTTGGTAACCACTAACACTTTCGCCTGTTAAGAGTAACATGTTTTCCACCAGGATTTTTACTGCTGAATGCACATCATGTGAACATGCAAATCTAAAAGCATTGTTTTAGCACATATACTATTACATATATCACATAGACAGTTGTTCACTGACAATCCTGTAGCCTAGAGCACACTGCTTATATGATGCATCTACATATAATTTGCCAGCTATTGATGCAGTGATGGCCTAATGGTTAGAGTCTGGCTTGTGATCTACTTATTGCTGTGTGTGTGTGCACTTGAATTAGTAAAATGCAGAGCATGAATTTCAAGTATGTGCAAGACAATACTGACACTTGCACTACACTGATCTGAATAAACTGAAGTGAACTTTAAATTTATACTACACTGAAATGAATTTTTTTAATGAATGTTTTAATTTAACTGGAACTACATCAGCATTCAACTCTCCTGCCTGCCGGACTTGCTGGAATGTTCCACAATCTGAATAATTAGGGCTTTTTATTATCTACTTTAAGCTGCACTGATATTTACATAGCTCTAAATTCCTTGTAGCCATGTAAATGCAATGCCAGAAGATTATAGCTTTTTAAAGTGAAACCTAAAGGATCAAATCGTCATTATTTTATTTTCTATTTTTGAAACATCCTCACAG
Seq C2 exon
TGGAGAATCTGGTGCAGGAAAGACTGTCAACACCAAACGTGTCATTCAGTACTTTGCAACAATTGCTGTGTCTGGAGGAGCAAAGAAGCAAGAACCTGTCCCAGGCAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095217:ENSDART00000075210:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]