GgaINT0132860 @ galGal3
Intron Retention
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:8582-8808:+
Coord C1 exon
chr19:8582-8609
Coord A exon
chr19:8610-8699
Coord C2 exon
chr19:8700-8808
Length
90 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
CCACTGCCCCATGGCTTCAGTGG
3' ss Score
4.32
Exon sequences
Seq C1 exon
ATCGTGAGAACCAGTCCATCCTCATCAC
Seq A exon
GTAAGTCCCAGCCCCATGATCCTGGAGGGGTGGGAGGGCAGCACTGCACTATAGTGCCCCACACATCTCACCACTGCCCCATGGCTTCAG
Seq C2 exon
TGGAGAATCCGGAGCGGGGAAGACTGTTAATACCAAGAGGGTCATCCAGTACTTTGCCAGCATTGCCGCCATTGGCGACCGCAAAAAGGAGGTGGCAAATAGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000040718:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGAGAACCAGTCCATCCT
R:
TTGCTGCTATTTGCCACCTCC
Band lengths:
135-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]