RnoINT0096520 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33626841-33627214:-
Coord C1 exon
chr15:33627187-33627214
Coord A exon
chr15:33626953-33627186
Coord C2 exon
chr15:33626841-33626952
Length
234 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGC
5' ss Score
5.62
3' ss Seq
CTGTCCCTTGTTGCCTCCAGTGG
3' ss Score
8.35
Exon sequences
Seq C1 exon
ATCGGGAGAACCAGTCCATCCTCATCAC
Seq A exon
GTGAGCAAGCTCTAATCCTCCACAGGGGGTTCGTGTAGGGATGGCCAGGCTGACGCCCTGGGTACAGTTGGGCAGGAGAGTCTTAAGGCCATAACTGCAAGGGTATGGTGGGAGGGGACTGGGCTCTTTTTGTGTTGGACTCTGGTGACCTAGGCTAGGAAAAGACAGGTGTGGAGCACTTGGTATGAACAATAGTGGAATTCAAGGGCTCTGACTGTCCCTTGTTGCCTCCAG
Seq C2 exon
TGGAGAATCCGGAGCGGGGAAGACTGTCAACACGAAGCGTGTCATCCAGTACTTTGCTAGCATTGCAGCCATAGGGGACCGTAGCAAGAAGGACAATCCTAATGCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.184
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]