MmuINT0103562 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55581858-55582244:-
Coord C1 exon
chr14:55582217-55582244
Coord A exon
chr14:55581970-55582216
Coord C2 exon
chr14:55581858-55581969
Length
247 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGC
5' ss Score
5.62
3' ss Seq
CCGCCCCTTGTTGCCTCAAGCGG
3' ss Score
4.04
Exon sequences
Seq C1 exon
ATCGGGAGAATCAGTCCATCCTCATCAC
Seq A exon
GTGAGCAAGCACTAACCCTCCACAGGGGGTTCGGGTGGGATGGCCAGGCTGACCACTGGGTACAGCTGTGAAGGAGAGTCTTCAGGCTATAATTGTAAGGGAGAGAGGACTGGGCTCTTTTTAGAAGCCAAAGCTCATGCCGTGCTGGGCTCTGGTGCCCTAGGCTAGGAAAGGACAGGTGTGGAGCATGTTGTATGAACAATAGTGGAAGTCCTGGGCTCTGATCGCCGCCCCTTGTTGCCTCAAG
Seq C2 exon
CGGAGAATCCGGAGCGGGGAAGACTGTGAACACAAAACGTGTCATCCAGTACTTTGCCAGCATTGCAGCCATAGGGGACCGTAGCAAGAAGGAAAATCCTAATGCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.184
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: