RnoINT0096542 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33654507-33655012:-
Coord C1 exon
chr15:33654985-33655012
Coord A exon
chr15:33654616-33654984
Coord C2 exon
chr15:33654507-33654615
Length
369 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGC
5' ss Score
5.62
3' ss Seq
GCCTTTGCTTGTCACAACAGCGG
3' ss Score
6.45
Exon sequences
Seq C1 exon
ATCGGGAGAACCAGTCCATCCTCATCAC
Seq A exon
GTGAGCATAGCTCTAGAATCCCTGATCCCAGACCTCCCGGGGGGTTGTGGGGTCAGACTCCTTTGCATGAACCTATGGCCCCCTTCCTCTCCACCCAGGTGTCTCCCCCCTCATCATTTCCCTTATCTTTCCCTTCAGAAGCCTTTTCTCTCCTCCCCACTTACTCTTCCCAAACAGCCCTCTCCTCTGATTGACCCCTCGTCTTCTGTGGCATCATCGTCTTCCTGCTTGCTAACCTGGTCCTATGTGCCGATCTCTAACGACTTCCTGATCAGCACCTTCTCTCCACTAGAGGACGTGCTCCCTCCTCACTCCTTGGTCTTTAACCAGTGTCTTTACTGCCTATTAAGCCTTTGCTTGTCACAACAG
Seq C2 exon
CGGAGAATCCGGAGCTGGTAAGACTGTCAACACCAAGAGGGTCATCCAATATTTTGCTGTTATTGCTGCCATTGGGGACCGCAGCAAGAAGGACCAGACCCCAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]