GgaINT0128361 @ galGal3
Intron Retention
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:497289-497526:-
Coord C1 exon
chr18:497499-497526
Coord A exon
chr18:497401-497498
Coord C2 exon
chr18:497289-497400
Length
98 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TTCTCTGTTTTGTTTGACAGCGG
3' ss Score
9.63
Exon sequences
Seq C1 exon
ACCGTGAGAATCAGTCGATCCTGATCAC
Seq A exon
GTAAGTACGCTCCCTGATCGGGTCCCTGCGGGGCTGCCCTGTGCCAGGGGACCTTCTCCCTGACCTCATGCTCTCTGTTTCTCTGTTTTGTTTGACAG
Seq C2 exon
CGGAGAATCTGGTGCAGGGAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCAACAATTGCAGCTAGTGGGGAGAAGAAGAAGGAGGAGCAGCCTGGCAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800:ENSGALT00000001427:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTGAGAATCAGTCGATCCT
R:
ATTTTGCCAGGCTGCTCCTC
Band lengths:
136-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]