HsaINT0107716 @ hg38
Intron Retention
Gene
ENSG00000125414 | MYH2
Description
myosin heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:7572]
Coordinates
chr17:10543902-10544127:-
Coord C1 exon
chr17:10544100-10544127
Coord A exon
chr17:10544017-10544099
Coord C2 exon
chr17:10543902-10544016
Length
83 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
ATTGAGTTTTGATTTGACAGTGG
3' ss Score
1.9
Exon sequences
Seq C1 exon
ACCGAGAGAATCAGTCAATCCTGATCAC
Seq A exon
GTAAGTAGATTTTATGCTTTCTTTACATGGCTGTGATAGCTGCTAGGTTTGAGACCACATCTGATTGAGTTTTGATTTGACAG
Seq C2 exon
TGGAGAATCTGGTGCAGGGAAGACTGTGAACACCAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTTACTGGTGAGAAGAAGAAGGAAGAAATTACTTCTGGCAAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125414:ENST00000245503:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGAGAATCAGTCAATCCTGA
R:
TGCCAGAAGTAATTTCTTCCTTCT
Band lengths:
135-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development