RnoINT0096296 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53716926-53717150:+
Coord C1 exon
chr10:53716926-53716953
Coord A exon
chr10:53716954-53717035
Coord C2 exon
chr10:53717036-53717150
Length
82 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TGATTGTTTTGCTTTGACAGCGG
3' ss Score
7.1
Exon sequences
Seq C1 exon
ACCGGGAGAATCAGTCAATCCTGATCAC
Seq A exon
GTAAGTAGGGTTTTATGCTTTCTTTTCATGGCTATGGAAGCTGCTAGATGCGCGGCCTCCTCTGATTGTTTTGCTTTGACAG
Seq C2 exon
CGGAGAATCCGGGGCCGGGAAGACTGTGAACACGAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTCACTGGGGAGAAAAAGAAGGAGGAGGTGACTTCTGGCAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(2.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGGAGAATCAGTCAATCCT
R:
CTGCATTTTGCCAGAAGTCACC
Band lengths:
143-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]