GgaINT0128192 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:366163-366615:-
Coord C1 exon
chr18:366542-366615
Coord A exon
chr18:366251-366541
Coord C2 exon
chr18:366163-366250
Length
291 bp
Sequences
Splice sites
5' ss Seq
CGGGTACTG
5' ss Score
5.43
3' ss Seq
TCTTTGCTCTTGTTCTTAAGGAA
3' ss Score
8.21
Exon sequences
Seq C1 exon
AGAGTGGTGCCGGTGGCAAGAAGGGAGGCAAGAAGAAGGGGTCTTCTTTCCAGACTGTCTCAGCTCTTTTCCGG
Seq A exon
GTACTGTAGAATAAGCATAATGAACTTTATGAAATTGTGAAAAAGACACAGAAAAGTCAGTACAGGAAAGAAAGCTTTATATCAATCTAATATATAAAATATTTACGTTCAGAAAGAGGAAAGGCCTATGTTTCATAACAAAGAGTTTTCATCAAATCATTGGAAGAATTACTACAGAACTGCTGAAAAATTGTTTTATGATCATGATCTTAATGCAGCAGTTATACTCCATCTAATAATGAGATTGTGTAAGTGACATTTTTAAACATAATCTTTGCTCTTGTTCTTAAG
Seq C2 exon
GAAAATTTAAACAAACTGATGAGCAACCTGCGAAGCACACATCCCCATTTTGTGCGATGCCTCATTCCCAATGAAACAAAAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023884:ENSGALT00000040060:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGAAGGGAGGCAAGAAG
R:
CAGGTGTTTTTGTTTCATTGGGA
Band lengths:
148-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]