MmuINT0103653 @ mm9
Intron Retention
Gene
ENSMUSG00000055775 | Myh8
Description
myosin, heavy polypeptide 8, skeletal muscle, perinatal [Source:MGI Symbol;Acc:MGI:1339712]
Coordinates
chr11:67103445-67105768:+
Coord C1 exon
chr11:67103445-67103512
Coord A exon
chr11:67103513-67105680
Coord C2 exon
chr11:67105681-67105768
Length
2168 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
3' ss Seq
TCTTCGGTCTCACTTTCTAGGAA
3' ss Score
11.33
Exon sequences
Seq C1 exon
ATGGTGGTGCAAAGAAAGGAGCTAAGAAGAAGGGCTCTTCTTTCCAAACTGTGTCAGCCCTTTTCAGG
Seq A exon
GTAAAGTATAAATTTAGATTGGGAAAAAAAGTATATTCAGTTTCTATGTATTATATCTGTGCAATTTAGAATAAATTAGGAGGGAATGGGATAGAGATAAGAATCACTTTCAACATTCACTCATCAGGATCGATCTAAAGCAATACTTGGGCAGGGGTGGGAGCTTTATTCTTTATTCCTTATTATGATTACCTGCGGAATTTAGGAATGCCAATATGTCCTTAGAAGCTGTGAAGCTTCTTAGGCATTAAACACATACACACACACACACACGAGCATGTGAATAGATACCAATAATAATAAGGATGCTTTTTTTTTTTACTTTTTTTATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCCATATCCTTCCCCCACTCCCTTACCCACCCACTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCTAACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCTAGTGAAACACTTCTGAACCTCAGTGTGATTATTCCTTGTGAGGGTTGTGTTCCAATCCCATTAACAGTGCCTTTTGAGAAGACTTGAGATTTCCTTTGTTCTCTTTGGGACAATATCTTCCTATGTAGGTCAAGCTGACCTTGAACTTGTGAACTTAGTACCTCAGACTCCAGGGTTCTAGATTCTAGGCATGGGCCACCTTGCCAGGATTGAAGTTTCCTTTGAAAATGAGCAGGTATTATTTAAAACATGCTCCCCCTGAGGTGGATGGATCAGACAAAAGTCACTAAAACCGAGCCTAGTGATCTAAATTGATGGGTAAACTACCAAAGAATAAAACTTCTATTTACAAAATAGTGAAGCTTTTCCATTATATACGTGAACATTCCCATAATGCAATTATAACTCTTCCACAGCATAGCTCTTGCTGAGAGGAGCACGTAAGGTGTCTAGTCTAAGGCCTCCTTGTGAGGATTTTGATCCCTCATTGCTTTCAAAACTAAAACACTAGATGGTTTGTTGGTCTAGTGGTATGATTCTCAGTTTGGGTTTGAGAGGTCCTGGGTTCAAATCCCAGACGAGCCCCCCTTTTCCTCAACTTCCATTTGTAATTTGCCTACTTCCATTCTAATTTGCCTACACCACAGTACCAGATAACAAGTTGAAGAAAGGGCTAAAAGTCCAAAACTAAAATGTAGGTGTGACCAATTGAATGACCTTTGGCCTAACCAGAAAATTTGGTCTTATCTTTTTTCCGTTTCACTTAAATCTACATTATCCAACAAAACATAAGGTTGCTTTGTAAACTTGTCTATAAAGGCATTTTCAGGCTTAGATCTTCACATTATTTGTTTTGATTTCCTAGTGGCTGAGATGCGTGGGGAAAGCATATGTGAGAGATGTCTACAAGTACGTTCTTTACGGCTGAACGACCACTCTCCATCATAATCAATTACTCCCCCATAGACTCTAGGCAGAAAATGTTTTCAAGCACCTAAGATCCACCCACACAGAATTACATTGACTCACACTTTACACTCTTCTGAAAACAAAACAAGAAATTATTGGATTGAGAAAGGCTAAAATGATTGCAGAGCTGGGTTTTCACTGGAACTTGCCAGGTACTGTGAAAGTTATGCTGAAGACAAGAGAGGCCACAGAGGTCATCTGCACTGTTTTCACACGAGGCCCAGGGAGACACAGGATGGCACGTAGTCAGCCTAGTGGCAGAGACAGCCTATGGTCAGTCTTCTGATGCTGGCTGAGAATACTGCTTGTGTATGGAGGCCAGTGACCATGCTGTCCGGACCTAGGTGCTGTAATGGGCACCTTGGTCATCTGCATTTCTTCCCAGCATTTTGGCCTTCTGACCATTTAAGCAGCTTACATGCTGAAAGCCTTTCAAGATGCATAGCCGTTACAGCCTCATAAGCTTATGTCCAGTAGCTAAGAGTGTGCTGTATAATTTTTTTACCAAAAAGGAAAAAAGAAAAGGAAGAAAAAAAAAACCCCAAAACACAACTTTCTCACGACTCTTCGGTCTCACTTTCTAG
Seq C2 exon
GAAAACTTAAATAAACTGATGACCAATCTGAGAAGTACACACCCTCACTTCGTACGGTGTATCATTCCCAATGAAACGAAGACTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055775-Myh8:NM_177369:17
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: