GgaINT0128359 @ galGal3
Intron Retention
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:498649-499046:-
Coord C1 exon
chr18:498903-499046
Coord A exon
chr18:498806-498902
Coord C2 exon
chr18:498649-498805
Length
97 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGT
5' ss Score
9.27
3' ss Seq
GCTGTGTCCCTTCCTCACAGACC
3' ss Score
10.9
Exon sequences
Seq C1 exon
ACTCTAACTGTGAAGGAAGATCAAATCTTCTCCATGAATCCTCCCAAGTACGATAAAATTGAGGACATGGCCATGATGACCCACCTCCACGAACCCGCTGTGCTGTACAACCTCAAAGAGCGTTATGCAGCCTGGATGATCTAC
Seq A exon
GTAAGTACCAGCAGCTCTCTTGCTTGGGCAGCGTAGCTGGGGAGGACTGCTGTGCCAGGCTGAGTGGAAGCCGACGTGCTGTGTCCCTTCCTCACAG
Seq C2 exon
ACCTACTCGGGCCTCTTCTGTGTCACTGTCAACCCCTACAAGTGGCTGCCGGTGTACAACCCGGAGGTGGTGTTGGCCTACCGAGGCAAAAAGCGCCAGGAGGCCCCTCCACACATTTTCTCCATTTCTGACAACGCCTATCAGTTCATGCTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800:ENSGALT00000001427:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(34.6=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTGCTGTACAACCTCAA
R:
GAAAATGTGTGGAGGGGCCTC
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]