GgaINT0128368 @ galGal3
Intron Retention
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:494029-494396:-
Coord C1 exon
chr18:494278-494396
Coord A exon
chr18:494179-494277
Coord C2 exon
chr18:494029-494178
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TGCACACCTCTTTGTTTTAGGTG
3' ss Score
10.58
Exon sequences
Seq C1 exon
TTGCAGACAAGGCTGCCTACCTGATGGGTCTGAACTCAGCAGACCTGCTCAAGGCCCTGTGCTATCCTCGTGTCAAGGTTGGGAATGAGTACGTGACCAAGGGTCAAACTGTGCAGCAG
Seq A exon
GTAGGAAACAGACCATCACTGGGAACCTCTGGCTTGTAAGACTGGAACATTTTACTTTATATATTGATTTTTCTTCTGCTGCACACCTCTTTGTTTTAG
Seq C2 exon
GTGAACAACTCAGTTGGTGCTCTGGCAAAGGCTGTCTATGAGAAGATGTTCTTGTGGATGGTTGTTCGCATCAACCAACAGTTGGATACCAAGCAGCCCAGGCAGTACTTCATTGGTGTCCTGGACATCGCTGGATTTGAGATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800:ENSGALT00000001427:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCGTGTCAAGGTTGGGA
R:
CCAATGAAGTACTGCCTGGGC
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]