RnoINT0096269 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53719871-53720230:+
Coord C1 exon
chr10:53719871-53719989
Coord A exon
chr10:53719990-53720080
Coord C2 exon
chr10:53720081-53720230
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TTCTATCTTCATTTTTCAAGGTG
3' ss Score
8.37
Exon sequences
Seq C1 exon
TGGCTGACAAGGCTGCCTATCTTCAGGGTCTGAACTCTGCTGACCTGCTCAAAGCCCTTTGTTACCCCAGGGTCAAGGTCGGCAATGAGTACGTCACCAAAGGCCAGACTGTGGAGCAG
Seq A exon
GTAAATGCATGAAATTAGTAACCACCACAAGGGGATCAAAGCATTGAACTTTCCTCGTGTAACATCAAAAGTTCTATCTTCATTTTTCAAG
Seq C2 exon
GTGACCAACGCTGTGGGTGCCCTGGCCAAGGCCATGTACGAGAAGATGTTCCTGTGGATGGTCACCCGCATCAACCAGCAGCTGGACACCAAGCAGCCCAGGCAGTACTTCATCGGGGTCTTGGACATCGCTGGCTTTGAGATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAATGAGTACGTCACCAA
R:
TGTCCAAGACCCCGATGAAGT
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]