GgaINT0128372 @ galGal4
Intron Retention
Gene
ENSGALG00000028134 | MYH1B
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_989559]
Coordinates
chr18:482415-483083:-
Coord C1 exon
chr18:483001-483083
Coord A exon
chr18:482503-483000
Coord C2 exon
chr18:482415-482502
Length
498 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAG
5' ss Score
6.23
3' ss Seq
TTTCAACACATGATCCACAGGAG
3' ss Score
4.92
Exon sequences
Seq C1 exon
AGGCTAGTGGTGGTGGTGGTGGTGGCAAGAAAGGTGGCAAGAAGAAGGGTTCTTCTTTCCAGACTGTCTCAGCCCTTTTCCGG
Seq A exon
GTAAAGTATGGATTTCATTATCACTATAATGACATGAAAACAGTTAGAGATCTGAGCTGTCTGAACTACCATTCTTCTCACAATCTTTGTTTTTTGATGAAAAACCAATAAGTATAAATCAGACAGATGTTATTTCACTGCCTTTTCTTCTTTTTTTTCTGCTCACATTTGTGATATGTTTCTAGTACTCTTCAGCTGACCCCTTGAATTTGTTTCAAAATTTCACTTATGTTCTCTGTGAGAACTTTTGTTTTACTCGTGACGTAGTAAAAACAATAATTATGGATTGCCTGAACATTTTTCATTTCCTCCAGATTATGGTACAGAAATTTTAACTTTCTGTTAATAAAAATAAATACTTATGTAGGAGATTTCATTAAATTTGAATTTTGGATCTGAAAGCTACATTCTCCAAAGATTCATTATATTCTTTTCACTTAGATACAGAGTGTGTAGAAGTAAAAAATTTTAATCTAAGTTTCAACACATGATCCACAG
Seq C2 exon
GAGAACCTAAACAAACTGATGACCAACCTACGGAGTACTCACCCTCATTTTGTTCGCTGCATCATCCCAAATGAAACAAAAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028134:ENSGALT00000001427:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]