MmuINT0103420 @ mm9
Intron Retention
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:66995485-66997105:+
Coord C1 exon
chr11:66995485-66995564
Coord A exon
chr11:66995565-66997017
Coord C2 exon
chr11:66997018-66997105
Length
1453 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
AAAGTTCTCTGCTCTTACAGGAG
3' ss Score
8.08
Exon sequences
Seq C1 exon
AGGCAAGTAGTGGTGGAGCTGCCAAGAAAGGTGCCAAGAAGAAGGGGTCCTCTTTTCAGACCGTGTCTGCCCTGTTCAGA
Seq A exon
GTAAGAACAAACTAACACCCCAATTGCTTTAGGAATTTGGCTCTAGAAGTATGATGTCACATTCTCCAGAAGAGTCTAGAAAAGGGTTGACATTTACAACTTTGACTGATCTATAGTGTATCTCACTTCTCATGCTAAGTTGCCATAGGATGAAGGGTACCTCCTGGGAAACCTTACAGAACTTAATGATCCACCATTCAAAAACTAGTCGGGTGACAACCCAAAGCCATGTACAGAAGTATTAAGAAAATATCAGTAAGACTAAGGAACCTGGAAGTTGTGGTGTTGCCAACCTGTAATCCTTGGGAGGCAGAAGCAGGAGGATTGAAAATTTCAAAACAGCCTGGGATACATTTTTGAGAATATTCCAATGACAGCAAGCCCAAACTAAACCCAACTAAACCAACATCAAAACAAAGAGAAAGATTAACGCAACCTAGCAGCTAACCTACAATCAAGCTAATATAATATTGTTGCTACTGATCCATTCAGTTGTCGGCACCAAGTTACAAAGTATTATGTTATGGATGGAACTGTAAAAAACCATCTAAGGTCCAAACATGGTGCATGATTGCATATCCTTATTGAATAACTAGAGCATAGTAAAAGATAGAGGTATCATGTAATACAATGGTTATCAACCTTCCTAATGCTGAGACCCTTTAATACAGCTCCTCATGTTGTGGTAACTCCCAGCCACAACATTATTTTTGTTGCTACCATAGTTTTGCTATTATGAACCATAATGTAAATATCTGATATGTAACCCCCAAAAGGCTTGCAATGCACAGGTTAAGAACTACTGATCTAGTAGATAATCATGTTCAAATGATCAAAGGTCAGAGAAGACAGCAAGACAATGTTAGTACAAAGGGAAAGAAAACACACCATCAGGCTTTCCCACATTCATCCCTCCTGCCAACAAGAATGCAGACAGATGGACTGAGGAAGAGGCTACAGCCCAGCAGAAGCAAGAAAAGTCTTTCTTTTTAAAATGAGAACTGCTTCTCCTGGGCCAAGGCTTAATCAGTAAAGTACTTGTCTTGCAAGTGTGAGGGTCTAAATTTAGATACTCACAAGAAAAACCTGGCATGGTGGTGTGCTCCTACAACCCCACCAATGGTGAGACGGAAGGCAGAGACAAATGGAGCCTTGAAAGATCCCAGGATAGCAAGCTATGGCTAAAGTTCTAGTCCAATGAGAGACCCTGTCTCAACCACAAGATGGAAGATACTCAAGGACTGATACGCAAGGATGGCCTAAAGCTGTAGAGGAGTGGTGTGCATGTGCACACATGTGTACGAGCGCGCGCGCGCGCATGCAAACACACACACACACACACACACACACACACACACACACACACACACACAAGCCACAGAGTTATTTTACAGATGTCAACAATTGCTCTTTCCTCTCCTGCTATTCTGACCAAAGTTCTCTGCTCTTACAG
Seq C2 exon
GAGAATTTGAACAAGCTGATGACCAATCTCAGGAGCACCCATCCTCATTTCGTGAGGTGTATCATCCCCAATGAAACCAAGACTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196-Myh2:NM_001039545:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: