GgaINT0128388 @ galGal3
Intron Retention
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:484898-485690:-
Coord C1 exon
chr18:485566-485690
Coord A exon
chr18:485207-485565
Coord C2 exon
chr18:484898-485206
Length
359 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCAT
5' ss Score
2.99
3' ss Seq
TATTTTTTTTTTTTTCCTAGGCC
3' ss Score
10.44
Exon sequences
Seq C1 exon
AGGAGATTTCTGACCTCACGGAGCAGATTGCAGAGGGAGGAAAGGCAATTCATGAGTTGGAGAAAGTCAAGAAGCAGATTGAGCAGGAGAAGTCTGAAATCCAGGCTGCTCTGGAAGAAGCTGAG
Seq A exon
GTGCATTCTTTTTTCCTTAGCTGTTTGCCTACCATTTGTTATGTACAATTGTTTATTTAACATAGATTAGAAACCTTAATATCATTTGTGAAATTGTATGCATGTAAGGATAACTTCCAGGCACGAGAAGCATAGGGTGTTAAACATATTTACAGTCTTCCATTATATGGCAATCCTTTTCTTTTTTGTGCAATGATGATGCTATGCAGTAGTGACTATGGGATTTTGGTTTCTTTAGTCTCTATGCCATTTAATTCATCAAATGTTTGTGTTGTTTTTTTTTTTCATTTATTCAGTGATGTTTTATTTGTATTACTTTGTATTGTTTTGTTTTGTTTTTATTTTTTTTTTTTTCCTAG
Seq C2 exon
GCCTCCCTGGAACATGAAGAGGGGAAGATCCTGCGCCTCCAACTGGAGCTCAACCAGGTCAAGTCTGAGATTGACAGGAAAATAGCAGAGAAAGATGAGGAAATTGACCAGCTGAAGAGAAATCACCTCAGAATTGTGGAGTCCATGCAGAGCACTCTGGATGCTGAGATCAGGAGCAGGAATGAAGCCCTTAGACTGAAGAAGAAGATGGAGGGAGACCTGAATGAAATGGAGATCCAGCTCAACCATGCCAACCGCGTGGCTGCAGAGGCACAAAAGAACCTTAGAAACACACAAGGAGTGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800:ENSGALT00000001427:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.388
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.8=100),PF045827=Reo_sigmaC=PD(24.1=78.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(11.8=100),PF0003816=Filament=PD(11.8=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGCAGAGGGAGGAAAGGC
R:
TTGGCATGGTTGAGCTGGATC
Band lengths:
354-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]