MmuINT0103438 @ mm9

Intron Retention

Gene

ENSMUSG00000033196 | Myh2

Description

myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]

Coordinates

chr11:67006440-67007028:+

Coord C1 exon

chr11:67006440-67006564

Coord A exon

chr11:67006565-67006719

Coord C2 exon

chr11:67006720-67007028

Length

155 bp

Sequences

Splice sites

5' ss Seq

GAGGTACAG

5' ss Score

6.62

3' ss Seq

TGCCTCTTGATGTCCTGAAGGCA

3' ss Score

5.05

Exon sequences

Seq C1 exon

AGGAGATTTCTGACCTCACGGAACAGATTGCAGAAGGAGGAAAGCGCATCCACGAACTGGAGAAAATTAAGAAACAAGTCGAACAAGAGAAGTGTGAACTTCAGGCTGCTCTAGAAGAAGCAGAG

Seq A exon

GTACAGGCTGCATACACGGTTAACCAACTTATAGAGGAAGAATTAAGTCCACCTACGGGGCATGCAAACAGGCACAGCACACAGTCATCTGTGTGTAGCAACATGGCAGCATGCTTGTTCCTCGTTTGCTAATGTTGCCTCTTGATGTCCTGAAG

Seq C2 exon

GCATCTCTGGAGCACGAGGAGGGAAAGATCCTGCGCATCCAGCTGGAGCTGAACCAAGTCAAGTCTGAGATCGACAGGAAGATTGCTGAGAAGGATGAGGAGATCGACCAGCTGAAGAGAAACCACATTAGAGTCGTGGAGTCCATGCAGAGCACGCTGGATGCCGAGATCAGGAGCAGGAACGACGCCATCAGAATCAAGAAGAAGATGGAGGGAGACCTGAACGAGATGGAAATCCAGCTGAACCACTCCAACCGCATGGCTGCCGAGGCCCTGAGAAACTACAGGAACACACAAGGCATCCTCAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000033196-Myh2:NM_001039545:33

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.262 A=NA C2=0.241

Domain overlap (PFAM):

C1:

PF135141=AAA_27=FE(5.6=100),PF0157614=Myosin_tail_1=FE(8.0=100),PF0003816=Filament=FE(14.5=100),PF045827=Reo_sigmaC=PD(24.8=90.5),PF060097=Laminin_II=PD(14.9=35.7)

A:

NA

C2:

PF135141=AAA_27=FE(3.4=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=FE(8.8=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000018641