RnoINT0096289 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53733448-53734035:+
Coord C1 exon
chr10:53733448-53733572
Coord A exon
chr10:53733573-53733726
Coord C2 exon
chr10:53733727-53734035
Length
154 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
CGCCTCTCGCTGTCCTTAAGGCA
3' ss Score
5.15
Exon sequences
Seq C1 exon
AGGAGATTTCTGACCTCACGGAACAGATTGCAGAAGGAGGAAAGCGCATCCACGAACTGGAGAAAATAAAGAAACAAGTCGAACAAGAGAAGTGTGAACTTCAGGCTGCTCTAGAAGAAGCAGAG
Seq A exon
GTACAGGCTGCATGCACGGTTAACCAACATATCGGGAAGAATTAAATCCTCCCGCAGAGCGTGTGAACAGGCATAGCACACAGTCCTCTGTGTGTGGCAACACTGCCTCATACTTGTTCCTTGTTTGCTAATGTCGCCTCTCGCTGTCCTTAAG
Seq C2 exon
GCATCTCTGGAGCACGAGGAGGGAAAGATCCTGCGCATCCAGCTGGAGCTGAACCAAGTCAAGTCTGAGATCGACAGGAAGATTGCTGAGAAGGATGAGGAGATCGACCAGCTGAAGAGAAACCACATTCGAGTCGTGGAGTCCATGCAAAGCACGCTGGACGCCGAGATCAGGAGCAGGAACGACGCCATCAGGATCAAGAAGAAGATGGAGGGAGATCTCAATGAGATGGAAATCCAGCTGAACCACGCCAACCGCATGGCTGCTGAGGCCCTGAGAAACTACAGGAACACCCAAGGCATCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(22.0=78.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCACGGAACAGATTGCAG
R:
TGGACTCCACGACTCGAATGT
Band lengths:
258-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]