RnoEX0056916 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53729186-53735166:+
Coord C1 exon
chr10:53729186-53729362
Coord A exon
chr10:53729446-53729591
Coord C2 exon
chr10:53735041-53735166
Length
146 bp
Sequences
Splice sites
3' ss Seq
CAAACACCACATTCATCTAGCTT
3' ss Score
1.55
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GTGAAAAACCTCACAGAGGAGATGGCGGGCCTGGACGAAACCATCGCCAAGCTGACCAAGGAGAAGAAGGCCCTGCAGGAGGCCCACCAGCAGACCCTGGATGACCTGCAGGCAGAGGAGGACAAAGTCAACACCCTGACCAAAGCCAAAATCAAGCTGGAACAGCAAGTGGATGAT
Seq A exon
CTTGAAGGGTCCTTGGAGCAAGAAAAGAAGCTTCGCATGGACCTAGAAAGAGCCAAGAGAAAACTTGAGGGTGACTTGAAGTTAGCCCAGGAGTCCATCATGGACATTGAAAATGAGAAACAGCAGCTTGATGAAAGGCTCAAAAA
Seq C2 exon
AACACCAGCCTCATCAACACCAAGAAGAAGCTGGAGACAGACATTTCCCAGATCCAGGGAGAGATGGAGGACATCGTCCAGGAAGCCCGCAATGCAGAAGAGAAGGCCAAGAAAGCCATCACTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX1-14/41=13-25
Average complexity
C2
Mappability confidence:
94%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=0.551 C2=0.667
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(28.0=89.8),PF0157614=Myosin_tail_1=FE(43.6=100)
A:
PF0157614=Myosin_tail_1=PD(25.6=69.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACCAAGGAGAAGAAGGC
R:
GTCAGTGATGGCTTTCTTGGC
Band lengths:
253-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]