RnoEX0056919 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53729851-53735166:+
Coord C1 exon
chr10:53729851-53730162
Coord A exon
chr10:53730767-53730893
Coord C2 exon
chr10:53735041-53735166
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTCTCTCTCAGGGA
3' ss Score
13.06
5' ss Seq
CCGGTAATT
5' ss Score
6.28
Exon sequences
Seq C1 exon
GCTCGCATTGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCAGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGCGGCTGGAAGAAGCCGGCGGGGCCACTTCAGCCCAGATCGAGATGAACAAGAAGAGAGAGGCCGAGTTCCAGAAAATGCGCAGGGACCTGGAGGAGGCCACCCTGCAGCACGAAGCCACAGCAGCCACCCTGAGGAAGAAGCACGCGGACAGCGTGGCTGAGCTCGGGGAGCAGATTAATGTAGAGACAGTGTCTAAGGCCAAG
Seq A exon
GGAAACCTAGAGAAGATGTGCCGCACCCTGGAGGACCAGGTGAGTGAGCTGAAGTCGAAGGAGGAGGAACAACAGCGCCTGATCAACGACCTGACCACCCAGAGAGGACGCCTGCAGACCGAATCCG
Seq C2 exon
AACACCAGCCTCATCAACACCAAGAAGAAGCTGGAGACAGACATTTCCCAGATCCAGGGAGAGATGGAGGACATCGTCCAGGAAGCCCGCAATGCAGAAGAGAAGGCCAAGAAAGCCATCACTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX1-17/41=16-25
Average complexity
C3
Mappability confidence:
96%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=0.485 C2=0.667
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(12.2=100)
A:
PF0157614=Myosin_tail_1=FE(7.6=100)
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCGAGTTCCAGAAAATGC
R:
TGGCCTTCTCTTCTGCATTGC
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]