RnoEX0056938 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53721516-53735412:+
Coord C1 exon
chr10:53721516-53721675
Coord A exon
chr10:53722319-53722398
Coord C2 exon
chr10:53735242-53735412
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTATCTTTTTCCTTCTTCAGAGG
3' ss Score
10.17
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
CCTTCCCTCATCCACTATGCGGGCACCGTGGATTACAACATCACTGGCTGGCTGGACAAGAACAAGGACCCCCTGAATGAGACCGTGGTGGGGCTGTACCAGAAGTCTTCAATGAAAACTCTTGCTTACCTCTTCTCTGGAGCTCAAACTGCTGAAGCAG
Seq A exon
AGGCAAGTAGTGGTGGAGCTGCCAAGAAAGGTGCTAAGAAGAAAGGGTCCTCCTTCCAGACAGTGTCTGCCCTGTTCAGA
Seq C2 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCATCTGGAGCGGATGAAGAAGAACATGGAGCAGACGGTGAAGGACCTGCAACTGCGTCTGGACGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX1-6/41=5-26
Average complexity
C2
Mappability confidence:
92%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.222 C2=0.596
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(27.2=100)
A:
PF0006316=Myosin_head=FE(13.3=100)
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCACCGTGGATTACAACAT
R:
TGGTGTCCTGCTCCTTCTTCA
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]