RnoINT0096288 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53733182-53733572:+
Coord C1 exon
chr10:53733182-53733347
Coord A exon
chr10:53733348-53733447
Coord C2 exon
chr10:53733448-53733572
Length
100 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGG
5' ss Score
5.87
3' ss Seq
CCTGTTTTTCACCCTATTAGAGG
3' ss Score
6.35
Exon sequences
Seq C1 exon
ATCCTGGCAGAGTGGAAGCAGAAGTATGAGGAAACACATGCTGAGCTGGAGGCATCCCAGAAGGAAGCCCGCTCCCTGGGTACTGAGCTCTTCAAGATGAAGAACGCCTACGAGGAGTCCCTGGATCAGCTGGAAACCCTGAAGCGAGAGAATAAGAACTTACAGC
Seq A exon
GTAAGGCCCTTTCTCTCTCTCAACAGTACGCATGCGTTGGAGGGAACGCTCCTCTCTGGCAAGCCTTGACCACGCCCTCACCTGTTTTTCACCCTATTAG
Seq C2 exon
AGGAGATTTCTGACCTCACGGAACAGATTGCAGAAGGAGGAAAGCGCATCCACGAACTGGAGAAAATAAAGAAACAAGTCGAACAAGAGAAGTGTGAACTTCAGGCTGCTCTAGAAGAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=NA C2=0.238
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.4=100),PF045827=Reo_sigmaC=FE(36.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(22.0=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACACATGCTGAGCTGGAGG
R:
GAGCAGCCTGAAGTTCACACT
Band lengths:
246-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]